Cucurbitales platform

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Cme01g01969	ATGTCAATTGTTAGTGATTTGTTTGGTAATTACCAAGAAAATTTCTTGTGGAACAATGATCACTGTGGGAGTTTGATTTCTGGGCAAGAAGAGAGTTCATTTGACTTCAATTACTTGAACAAGATGTTGTTTGATGATATGGTTTCCGTGGCCGCCGAAGAGACGATGTCGTCCTCGGATTCGAGCTCTTGCTCGTCTTCGATTGTGATGCAAGTTAAGGAGGAGGTGGTGGAAGTGGAGGTGGATGAAGGGAGTTTTAGTGAGGACGTGGTTGTGGAGGAAGATCAATCACATAAAGAGGAAAGGGTTTATCGAGGAGTACGGAGGAGGCCGTGGGGGAAGTATGCAGCCGAAATTAGGGACTCGACACGACAAGGGGTGAGAGTGTGGTTGGGGACGTTCGATAGCGCCGAGGCGGCTGCGTTGGCATATGACCAAGCCGCATTTTGTATGAGAGGAGGGTTAGCTACGCTCAACTTTCCGATCGAGGTCGTTCGAGAGTCGCTTAGGGAAATGAAGTATCGGCGGGAGGTTGGGAGCTCGCCGGTCTTGGCACTTAAGCGGCGCCACTCAATACAGAGGAAGAGGATGGCTGAAGTGGAGAAGATGGAGAAGAAGATGATGAAGAAGAAGAAGAAGAAAAGTGTAGTTGTTTTTGAGGATTTGGGTGTTGAGTACTTGGAAGAACTCTTAAGTTTGACTTCTTAA	708	47.46	MSIVSDLFGNYQENFLWNNDHCGSLISGQEESSFDFNYLNKMLFDDMVSVAAEETMSSSDSSSCSSSIVMQVKEEVVEVEVDEGSFSEDVVVEEDQSHKEERVYRGVRRRPWGKYAAEIRDSTRQGVRVWLGTFDSAEAAALAYDQAAFCMRGGLATLNFPIEVVRESLREMKYRREVGSSPVLALKRRHSIQRKRMAEVEKMEKKMMKKKKKKSVVVFEDLGVEYLEELLSLTS	235

Gff information

Chromosome	Start	End	Strand	Old_gene	Gene	Num
1	28057785	28058492	-	MELO3C015737.2.1	Cme01g01969	318945

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Cme01g01969	235	SUPERFAMILY	DNA-binding domain	103	163	IPR016177	GO:0003677
	Cme01g01969	235	Pfam	AP2 domain	103	153	IPR001471	GO:0003700\|GO:0006355
	Cme01g01969	235	ProSiteProfiles	AP2/ERF domain profile.	103	161	IPR001471	GO:0003700\|GO:0006355
	Cme01g01969	235	CDD	AP2	104	162	IPR001471	GO:0003700\|GO:0006355
	Cme01g01969	235	PRINTS	Ethylene responsive element binding protein signature	104	115	IPR001471	GO:0003700\|GO:0006355
	Cme01g01969	235	PRINTS	Ethylene responsive element binding protein signature	127	143	IPR001471	GO:0003700\|GO:0006355
	Cme01g01969	235	PANTHER	DNA-BINDING DOMAIN	29	233	IPR044808	GO:0003700\|GO:0009873
	Cme01g01969	235	PANTHER	ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 1B	29	233	-	-
	Cme01g01969	235	Gene3D	AP2/ERF domain	103	164	IPR036955	GO:0003700\|GO:0006355
	Cme01g01969	235	SMART	rav1_2	103	167	IPR001471	GO:0003700\|GO:0006355

Event-related genes

Select	Gene_1	Gene_2	Event_name
	Cme01g01969	Cme04g01023	CCT

Duplication type information

Select	Gene1	Location1	Gene2	Location2	E-value	Duplicated-type
	Cme01g01969	Cme-Chr1:28057785	Cme04g01023	Cme-Chr4:13957162	1.06E-52	dispersed
	Cme01g01969	Cme-Chr1:28057785	Cme01g01972	Cme-Chr1:28089655	4.58E-28	proximal

Transcription factors information

Select	Gene	Hmm_acc	Hmm_name	Score	E-value	Regulatory Factors	Family
	40779	PF00847	AP2	4.70E-15	CL0081	Cme	TF

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Cme01g01969	K14516		-	csv:101205053	331.257