Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme01g01979 ATGACCAGGTTGACTGCGAGGGTTCAAAAGGTAAGAGATGAGCTCGAACAATTACTGGACGACGACGATGATATGGCAGACCTTTACTTGTCAAGAAAGATGAGCTCATCTTCTCCTGTAAGTGGTTCTGGTCCTGCCAATTGGTTTCCCGCCTCTCCTACCATTGGTTCAAAGATCTCGAGAGCAAGCAGAGCAAGTGTTGCAACTGTACGTGGGGACGAGGATGACATCGAGGAACTTGAAATGCTGCTGGAGGCTTACTTTATGCAAATTGATGGTACATTGAACAAATTAACTACAGTAAGTTCACCTGTTCCCTGCTTATCTAATTTATGA 336 44.64 MTRLTARVQKVRDELEQLLDDDDDMADLYLSRKMSSSSPVSGSGPANWFPASPTIGSKISRASRASVATVRGDEDDIEELEMLLEAYFMQIDGTLNKLTTVSSPVPCLSNL 111
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 28231669 28232867 - MELO3C028495.2.1 Cme01g01979 318955

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme01g01979 111 PANTHER RNA SPLICING PROTEIN MRS2, MITOCHONDRIAL 1 101 IPR039204 -
Cme01g01979 111 Gene3D Magnesium transport protein CorA, transmembrane region 1 107 - -
Cme01g01979 111 Coils Coil 1 21 - -
Cme01g01979 111 PANTHER MAGNESIUM TRANSPORTER MRS2-I 1 101 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme01g01979 K16075 MRS2, MFM1; magnesium transporter - csv:101203841 156.762
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme01g01979 Cme-Chr1:28231669 Cme05g00459 Cme-Chr5:4198967 2.16E-29 dispersed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cme04g01722 . 1 447 MRS2 Gene Family AT1G16010 84.6 2.5e-206 714.9
Cme05g00459 . 35 322 MRS2 Gene Family AT1G16010 50.3 2.8e-72 269.6
Cme05g00459 . 1 326 MRS2 Gene Family AT5G64560 66.9 3.3e-106 382.1
Cme05g00518 . 1 173 MRS2 Gene Family AT5G64560 71.8 1.7e-62 236.9
Cme01g01979 . 1 101 MRS2 Gene Family AT5G64560 80.4 2.5e-37 153.3
Cme01g00132 . 1 495 MRS2 Gene Family AT3G19640 63.5 1.4e-154 543.1
Cme06g01215 . 59 443 MRS2 Gene Family AT3G58970 69.4 4.0e-140 495.0
Cme04g01722 . 13 447 MRS2 Gene Family AT2G03620 53.3 4.1e-113 405.2
Cme03g01452 . 1 194 MRS2 Gene Family AT2G03620 66.5 3.6e-61 232.6
Cme05g00459 . 1 326 MRS2 Gene Family AT5G09690 64.0 7.7e-104 374.0
Cme04g01722 . 40 383 MRS2 Gene Family AT5G09690 50.3 5.5e-78 288.1
Cme05g00518 . 1 172 MRS2 Gene Family AT5G09690 69.9 3.7e-58 222.2
Cme05g00459 . 34 292 MRS2 Gene Family AT5G09720 62.0 3.3e-77 285.4
Cme05g00518 . 23 172 MRS2 Gene Family AT5G09720 68.2 9.3e-48 187.6
Cme04g01722 . 1 447 MRS2 Gene Family AT1G80900 83.0 1.2e-200 696.0
Cme03g01452 . 1 194 MRS2 Gene Family AT1G80900 52.8 8.5e-45 178.3
Cme12g00517 . 16 458 MRS2 Gene Family AT5G22830 68.8 4.1e-159 558.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0046058 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme01g01979 Cme_Chr01 FPKM 10.872832 12.273967 12.893994 12.495235 9.617266 9.399358 10.510856 12.353331 11.61343 12.077118