Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme01g02003 ATGGCTAACAATCATTCCGATACTCAAGCCGATGATTTCCTCGAACAGATTCTTGGGATCCCTTTTGGTTCCTCCGACCAAGGGTTAGCTGGAACTGACGGCGGATTGGCTGGAGCTGCTGCTGCTGCTGCCGCGGCGGCAGCGGCTCAGGGTCAGGCTCCGATGATGCTTCAGCTTAGTTCCGGGGATGGTGGTGGTCATATCACTACGATTGGGAGTGGAAGTGTCGGTGGAACTGGGTTTCATGGAGGACCCCCTTTTCCTCTGGGGTTGAGTTTGGACCAAGGGAAGAGTGGGTTTCTTAAGGCTGAGGAAGCTTCTGGAAGTGGCAAGCGGTATTGTGGTGAGGTTGTTGATGTTCGAGCTTCGTCTGTTAAAAATGTTTTTCAAGGCCAACAAATGCATGCTACTATGGGTGCAGCCCCTCATCCACCAGCAATGCGCCCTAGGGTACGGGCAAGACGAGGACAGGCAACTGATCCACATAGTATTGCAGAGCGGTTACGAAGAGAAAGGATTGCAGAGAGAATTAGGGCTTTGCAGGAACTTGTACCGAGTGTTAATAAGACGGATAGAGCTGCAATGCTTGATGAAATAGTAGACTACGTAAAGTTCCTTCGCCTCCAAGTAAAGGTTCTGAGCATGAGTAGATTGGGTGGAGCTGGTGCTGTGGCACCACTTGTAACGGATATTCCACTATCATCAGTTGAGGAAGAAGGAAGTGAGGGTGGTAGGAACCAACCGGCATGGGACAAGTGGTCGAATGATGGTACAGAGAGACAAGTTGCTAAACTTATGGAAGAAAACGTGGGAGCCGCAATGCAATTCCTACAATCAAAGGCACTCTGCATAATGCCGATATCATTGGCTTCAGCGATTTATCACACACAACCTCCCGATAGCTCGAGCATTGTGAAGCCAGAGAGTAATCCTCCTGCATAG 942 50.0 MANNHSDTQADDFLEQILGIPFGSSDQGLAGTDGGLAGAAAAAAAAAAAQGQAPMMLQLSSGDGGGHITTIGSGSVGGTGFHGGPPFPLGLSLDQGKSGFLKAEEASGSGKRYCGEVVDVRASSVKNVFQGQQMHATMGAAPHPPAMRPRVRARRGQATDPHSIAERLRRERIAERIRALQELVPSVNKTDRAAMLDEIVDYVKFLRLQVKVLSMSRLGGAGAVAPLVTDIPLSSVEEEGSEGGRNQPAWDKWSNDGTERQVAKLMEENVGAAMQFLQSKALCIMPISLASAIYHTQPPDSSSIVKPESNPPA 313
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 28563473 28567285 + MELO3C015760.2.1 Cme01g02003 318979
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme01g02003 313 Pfam Helix-loop-helix DNA-binding domain 162 206 IPR011598 GO:0046983
Cme01g02003 313 SMART finulus 163 212 IPR011598 GO:0046983
Cme01g02003 313 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 155 216 IPR036638 GO:0046983
Cme01g02003 313 PANTHER TRANSCRIPTION FACTOR UNE12-RELATED 7 301 - -
Cme01g02003 313 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 7 301 - -
Cme01g02003 313 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 157 206 IPR011598 GO:0046983
Cme01g02003 313 MobiDBLite consensus disorder prediction 138 161 - -
Cme01g02003 313 Gene3D - 152 214 IPR036638 GO:0046983
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme01g02003 Cme-Chr1:28563473 Cme02g00158 Cme-Chr2:1175971 8.29E-99 dispersed
Cme01g02003 Cme-Chr1:28563473 Cme07g00258 Cme-Chr7:1678327 6.43E-22 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
40782 PF00010 HLH 1.20E-07 No_clan Cme TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme01g02003 - - csv:101218718 478.018