Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme01g02020 ATGATGGAAGAGGTTGAACAAGCTAATAGGGAAGCTGTTGAGAGTTGTCATAAAGTGTTGAATCTCTTGACTGTGGCTTCCTCGTCTCAAGATCAGTTGAAGCTTAGGAGTTGTTTAATGGCGGAAACTGGAGAGGCTTTGTTTAAGTTTAGGAAAGTTCTGTGTCTTCTTGATTCTTCTGGGTTGGGTCATGCAAGGGTCAGGAAAAAGAAGAAGGTCAACAACTTTTTGTTTAATTCCTCTTCTTCTTCTTCTTCTTCTTCTTCTTCCCCTTTTCCTCTTCCCCAATCTTTGTTCTTAGAAACTTCTTCCCCTGATTGCAGAATGGACCTTCTCCAGTGCAGGAATTTGCATATGGGTCCTCTTTGTTTGGGGAACCCATCTTTGGAATTGAACACAAATGCCAAAAGTTGTTCAATCCAACAAATACAATCTCAATCTGCTGCTCTTTATCATCATCACTTGCTTCAGAACAGGGTGGTGTTGAATAATAATCCTAATCCTCCGCAGCATGAAATGGTGTATCTTAGGAGCAATAATGGTGTTAACTTGAATTTTGATAGCTCTAGCTGCACACAACACACAATGTCATCCACTAGATCGTTTATTTCTTCATTGAGCATTGATGGGAGTGTGGCTAACTTGGATGGGAGTGCCTTCCATTTGATTGGTGCGCCCCGGTCTTCGGATCAGAATTCGTATCATAAGAGGAAGTGCAATGGGAGAGGGGAAGATGGGAGTGTTAAATGTGGAAGCAATGGGAGATGTCACTGCTCAAAGAAGAGGAAACATAGAGTGAAGCGGTCGATCAAGGTGCCCGCGATTAGTAACAAGCTTGCAGATATCCCTCCTGATGATTATTCATGGAGGAAATATGGCCAAAAGCCAATCAAAGGTTCTCCACACCCAAGAGGTTACTATAAGTGCAGCAGCATGAGAGGTTGTCCAGCAAGAAAGCATGTTGAGCGGTGTCTCGAAGAACCTTCAATGCTCATTGTTACATATGAAGGTGAACACAACCATCCTAGAATACCTTCTCAACCTGCAAATACTTGA 1056 42.61 MMEEVEQANREAVESCHKVLNLLTVASSSQDQLKLRSCLMAETGEALFKFRKVLCLLDSSGLGHARVRKKKKVNNFLFNSSSSSSSSSSSPFPLPQSLFLETSSPDCRMDLLQCRNLHMGPLCLGNPSLELNTNAKSCSIQQIQSQSAALYHHHLLQNRVVLNNNPNPPQHEMVYLRSNNGVNLNFDSSSCTQHTMSSTRSFISSLSIDGSVANLDGSAFHLIGAPRSSDQNSYHKRKCNGRGEDGSVKCGSNGRCHCSKKRKHRVKRSIKVPAISNKLADIPPDDYSWRKYGQKPIKGSPHPRGYYKCSSMRGCPARKHVERCLEEPSMLIVTYEGEHNHPRIPSQPANT 351
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 28771807 28774668 - MELO3C015776.2.1 Cme01g02020 318996
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme01g02020 351 ProSiteProfiles WRKY domain profile. 278 344 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cme01g02020 351 SUPERFAMILY WRKY DNA-binding domain 281 343 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cme01g02020 351 Pfam WRKY DNA -binding domain 285 342 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cme01g02020 351 PANTHER WRKY TRANSCRIPTION FACTOR 21-RELATED 3 351 IPR044810 GO:0003700
Cme01g02020 351 SMART WRKY_cls 283 343 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cme01g02020 351 Pfam Plant zinc cluster domain 236 281 IPR018872 -
Cme01g02020 351 Gene3D WRKY domain 267 345 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cme01g02020 351 PANTHER WRKY DNA-BINDING PROTEIN 21-RELATED 3 351 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cme01g02020 Cme05g00464 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme01g02020 Cme-Chr1:28771807 Cme05g00464 Cme-Chr5:4242020 6.15E-114 dispersed
Cme03g00104 Cme-Chr3:1519291 Cme01g02020 Cme-Chr1:28771807 6.67E-10 dispersed
Cme03g00105 Cme-Chr3:1519328 Cme01g02020 Cme-Chr1:28771807 6.67E-10 dispersed
Cme01g02020 Cme-Chr1:28771807 Cme08g00590 Cme-Chr8:3758983 2.36E-56 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
40785 PF03106 WRKY 3.50E-26 CL0274 Cme TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme01g02020 - - csv:101216822 631.713