Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cme01g02020 | ATGATGGAAGAGGTTGAACAAGCTAATAGGGAAGCTGTTGAGAGTTGTCATAAAGTGTTGAATCTCTTGACTGTGGCTTCCTCGTCTCAAGATCAGTTGAAGCTTAGGAGTTGTTTAATGGCGGAAACTGGAGAGGCTTTGTTTAAGTTTAGGAAAGTTCTGTGTCTTCTTGATTCTTCTGGGTTGGGTCATGCAAGGGTCAGGAAAAAGAAGAAGGTCAACAACTTTTTGTTTAATTCCTCTTCTTCTTCTTCTTCTTCTTCTTCTTCCCCTTTTCCTCTTCCCCAATCTTTGTTCTTAGAAACTTCTTCCCCTGATTGCAGAATGGACCTTCTCCAGTGCAGGAATTTGCATATGGGTCCTCTTTGTTTGGGGAACCCATCTTTGGAATTGAACACAAATGCCAAAAGTTGTTCAATCCAACAAATACAATCTCAATCTGCTGCTCTTTATCATCATCACTTGCTTCAGAACAGGGTGGTGTTGAATAATAATCCTAATCCTCCGCAGCATGAAATGGTGTATCTTAGGAGCAATAATGGTGTTAACTTGAATTTTGATAGCTCTAGCTGCACACAACACACAATGTCATCCACTAGATCGTTTATTTCTTCATTGAGCATTGATGGGAGTGTGGCTAACTTGGATGGGAGTGCCTTCCATTTGATTGGTGCGCCCCGGTCTTCGGATCAGAATTCGTATCATAAGAGGAAGTGCAATGGGAGAGGGGAAGATGGGAGTGTTAAATGTGGAAGCAATGGGAGATGTCACTGCTCAAAGAAGAGGAAACATAGAGTGAAGCGGTCGATCAAGGTGCCCGCGATTAGTAACAAGCTTGCAGATATCCCTCCTGATGATTATTCATGGAGGAAATATGGCCAAAAGCCAATCAAAGGTTCTCCACACCCAAGAGGTTACTATAAGTGCAGCAGCATGAGAGGTTGTCCAGCAAGAAAGCATGTTGAGCGGTGTCTCGAAGAACCTTCAATGCTCATTGTTACATATGAAGGTGAACACAACCATCCTAGAATACCTTCTCAACCTGCAAATACTTGA | 1056 | 42.61 | MMEEVEQANREAVESCHKVLNLLTVASSSQDQLKLRSCLMAETGEALFKFRKVLCLLDSSGLGHARVRKKKKVNNFLFNSSSSSSSSSSSPFPLPQSLFLETSSPDCRMDLLQCRNLHMGPLCLGNPSLELNTNAKSCSIQQIQSQSAALYHHHLLQNRVVLNNNPNPPQHEMVYLRSNNGVNLNFDSSSCTQHTMSSTRSFISSLSIDGSVANLDGSAFHLIGAPRSSDQNSYHKRKCNGRGEDGSVKCGSNGRCHCSKKRKHRVKRSIKVPAISNKLADIPPDDYSWRKYGQKPIKGSPHPRGYYKCSSMRGCPARKHVERCLEEPSMLIVTYEGEHNHPRIPSQPANT | 351 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 28771807 | 28774668 | - | MELO3C015776.2.1 | Cme01g02020 | 318996 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cme01g02020 | 351 | ProSiteProfiles | WRKY domain profile. | 278 | 344 | IPR003657 | GO:0003700|GO:0006355|GO:0043565 | |
Cme01g02020 | 351 | SUPERFAMILY | WRKY DNA-binding domain | 281 | 343 | IPR036576 | GO:0003700|GO:0006355|GO:0043565 | |
Cme01g02020 | 351 | Pfam | WRKY DNA -binding domain | 285 | 342 | IPR003657 | GO:0003700|GO:0006355|GO:0043565 | |
Cme01g02020 | 351 | PANTHER | WRKY TRANSCRIPTION FACTOR 21-RELATED | 3 | 351 | IPR044810 | GO:0003700 | |
Cme01g02020 | 351 | SMART | WRKY_cls | 283 | 343 | IPR003657 | GO:0003700|GO:0006355|GO:0043565 | |
Cme01g02020 | 351 | Pfam | Plant zinc cluster domain | 236 | 281 | IPR018872 | - | |
Cme01g02020 | 351 | Gene3D | WRKY domain | 267 | 345 | IPR036576 | GO:0003700|GO:0006355|GO:0043565 | |
Cme01g02020 | 351 | PANTHER | WRKY DNA-BINDING PROTEIN 21-RELATED | 3 | 351 | - | - |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cme01g02020 | Cme05g00464 | CCT |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cme01g02020 | Cme-Chr1:28771807 | Cme05g00464 | Cme-Chr5:4242020 | 6.15E-114 | dispersed | |
Cme03g00104 | Cme-Chr3:1519291 | Cme01g02020 | Cme-Chr1:28771807 | 6.67E-10 | dispersed | |
Cme03g00105 | Cme-Chr3:1519328 | Cme01g02020 | Cme-Chr1:28771807 | 6.67E-10 | dispersed | |
Cme01g02020 | Cme-Chr1:28771807 | Cme08g00590 | Cme-Chr8:3758983 | 2.36E-56 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
40785 | PF03106 | WRKY | 3.50E-26 | CL0274 | Cme | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cme01g02020 | - | - | csv:101216822 | 631.713 |