Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme01g02042 ATGTTAAAGCTCATGGAACTTATGGTACTATTTACAGAGGAAACTATGATGGCAATGATGTTGCAGACAATCCTTGTGATAATTGACCATTTGTTCTTGATTAGATATGGAGCAGTTTTCAGAGGAAACCATAGTGTGCTTATGTCTAACTTGAGTGCAAAACAACTGAAAGTGCTTGACTGGGGAGAGGACGGTGTTTCCTCAGTCGCTGAAATTGCTGCTCTTCGAACATCTTTTCGCCAGGAAGTTGCTGTGTGGCATAAGCTTGACCATCCAAATGTTGCAAAGTTTTATGGAGCATCAATGGGGACGTCAAACCTTAAAATCCCTCCCAAAAGCTCATCGTTCGACAGCAACCAAACTTTTCCTTCAAGGGCTTGCTGCGTTGTTGTTGAGTATCTTCCAGGTGGAACACTAAAAAGCTTTTTAATCAAAAATAGGAAAAGGAAACTTGCATTTAAGGTTGTGATTCAACTTGCATTGGATCTTTCTAGAGGTTTGAGTTATCTACACTCCAAAAAGATTGTACACCGTGATATTAAAACAGAGAATGTTCTGCTAGATGCTCAGAAGACTCTGAAAATTGTTGATTTTGGCGTTGCTCGAGTCGAAGCACAGAACCCCAAGGATATGACTGGAGAGACTGGCACCCTTGGTTACATGGCCCCCGAGGTCCTTGATGGTAAGCCTTATAATCGGAAATGTGATGTTTACAGTCTTGGTATATGTTTGTGGGAAACATATTGCTGCGATATGCCTTACCCAGATCTCAGTTTTGCTGAAGTGTCTACTGCAGTTGTGCGGCAGAATTTACGACCGGAAATCCCTAGATGCTGCCCGAGTTCGTTTGCAAATATCATGAAAAGATGTTGGGACGCAAATCCAGAAAAGCGACCCGACATGGATGAGGTCGTAAAATTGTTGGAAGCCATTGATACAAGTAAAGGGGGTGGCATGATTACCGACGATCAGATTAGTTGTTTCTGTTTCCGTCCGGCTCGTGATGGTTCAGAGAAGTCGTTAAGCCAGATGATCCATCACGATACTCATTGGTTCATACAGTACATTTCTCAAGGTCATGGCTTTGGGACTCTGCAGAATCGATACTTCACTCCATCAAAAAGAGTCCAAAAAAAACAATTGCTTTTATCGATAATGAATGAAAGAATACAAGGACATACAAAACCCCCAACCCGTATAAGTTCTACTAAAGAAAAGGTTTCTATTTGA 1230 41.63 MLKLMELMVLFTEETMMAMMLQTILVIIDHLFLIRYGAVFRGNHSVLMSNLSAKQLKVLDWGEDGVSSVAEIAALRTSFRQEVAVWHKLDHPNVAKFYGASMGTSNLKIPPKSSSFDSNQTFPSRACCVVVEYLPGGTLKSFLIKNRKRKLAFKVVIQLALDLSRGLSYLHSKKIVHRDIKTENVLLDAQKTLKIVDFGVARVEAQNPKDMTGETGTLGYMAPEVLDGKPYNRKCDVYSLGICLWETYCCDMPYPDLSFAEVSTAVVRQNLRPEIPRCCPSSFANIMKRCWDANPEKRPDMDEVVKLLEAIDTSKGGGMITDDQISCFCFRPARDGSEKSLSQMIHHDTHWFIQYISQGHGFGTLQNRYFTPSKRVQKKQLLLSIMNERIQGHTKPPTRISSTKEKVSI 409
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 29154890 29160030 - MELO3C015795.2.1 Cme01g02042 319018
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme01g02042 409 Gene3D Transferase(Phosphotransferase) domain 1 134 326 - -
Cme01g02042 409 PRINTS Tyrosine kinase catalytic domain signature 279 301 IPR001245 GO:0004672|GO:0006468
Cme01g02042 409 PRINTS Tyrosine kinase catalytic domain signature 131 144 IPR001245 GO:0004672|GO:0006468
Cme01g02042 409 PRINTS Tyrosine kinase catalytic domain signature 169 187 IPR001245 GO:0004672|GO:0006468
Cme01g02042 409 PRINTS Tyrosine kinase catalytic domain signature 235 257 IPR001245 GO:0004672|GO:0006468
Cme01g02042 409 ProSitePatterns Serine/Threonine protein kinases active-site signature. 175 187 IPR008271 GO:0004672|GO:0006468
Cme01g02042 409 SUPERFAMILY Protein kinase-like (PK-like) 72 308 IPR011009 -
Cme01g02042 409 Gene3D Phosphorylase Kinase; domain 1 34 110 - -
Cme01g02042 409 SMART serkin_6 25 311 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme01g02042 409 Pfam Protein tyrosine and serine/threonine kinase 76 308 IPR001245 GO:0004672|GO:0006468
Cme01g02042 409 ProSiteProfiles Protein kinase domain profile. 25 311 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme01g02042 409 PANTHER KINASE ATMRK1, PUTATIVE-RELATED 36 329 - -
Cme01g02042 409 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 36 329 - -
Cme01g02042 409 CDD STKc_MAP3K-like 36 308 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme01g02042 Cme-Chr1:29154890 Cme04g01893 Cme-Chr4:26601405 2.80E-161 dispersed
Cme01g02042 Cme-Chr1:29154890 Cme06g00588 Cme-Chr6:3781618 1.00E-164 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
64628 PF07714 PK_Tyr_Ser-Thr 8.90E-54 CL0016 Cme PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme01g02042 - - csv:101207522 575.859