Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme01g02045 ATGAATGAGCAGGAAGGAATAGCAGTTGGAAGAAGCTTTGCAATGTTCAAACATTACAACATTGATGGCAACAAGGAAATGGTAGCCATTGGCACAATGAACATAGTCGGCTCTTGCTTCTCTTGTTATCTCACCACAGGCCCATTTTCCCGATCGGCTGTGAATTACAATGCAGGATGCAAAACCGCAGTATCAAACGTAGTTATGGCGATTGCAGTGATGTTGACATTGTTGTTCTTGACTCCTCTGTTCCACTACACTCCTCTTGTGGTGCTTTCTTCCATCATCATTTCCGCCATGCTTGGCCTCATCGATTACGAAGCTGCTATTCACTTGTGGAAGGTTGATAAATTCGATTTCCTTGTCTGTATTGGCGCTTATGCTGGTGTTGTCTTTGCCAGTGTTGAAATTGGATTGGTCATTGCGGTGGTGATATCTCTGCTTAGGTTACTTTTGTTCGTTGCAAGGCCGAGGACAGTTGTCCTTGGAAACCTTCCCAATTCCACGGTTTACAGGAACATTGAGCAATACCCAATTGCCGGTAATGTTCCCGGCGTTCTGATTCTTGAGATTGACGCTCCCATTTACTTTGCTAATTCAAGCTACTTGAGAGAGAGGATTATGAGGTGGGTTGATGAAGAGGAAGATAGGATAAAGGCTTCCAGTGAAAGTACGTTACAATTTGTCGTATTGGACATGAGTGTCTCAGAATTTATCTTTTTTCCAGCTGTTGGCAACATTGATACAAGTGGAATAAGCATGTTTGAAGAGTTGAAGAAGATTTTAGAAAGAAGGGGATTGAAGATAGTTTTGGCCAACCCTGGGGCTGAAGTGATGAAGAAGTTGGATAAGGGAAAGTTCATCGAGACCCTTGGACACGAATGGATCTATCTTACAGTAGCCGAAGCTGTTGCAGCCTGCAATTATATGCTCCACTCTTGCAAACCAAACCTTGTAACTGATGAGAAAGCTGAGCCATGGAACAATGTCTAA 993 43.2 MNEQEGIAVGRSFAMFKHYNIDGNKEMVAIGTMNIVGSCFSCYLTTGPFSRSAVNYNAGCKTAVSNVVMAIAVMLTLLFLTPLFHYTPLVVLSSIIISAMLGLIDYEAAIHLWKVDKFDFLVCIGAYAGVVFASVEIGLVIAVVISLLRLLLFVARPRTVVLGNLPNSTVYRNIEQYPIAGNVPGVLILEIDAPIYFANSSYLRERIMRWVDEEEDRIKASSESTLQFVVLDMSVSEFIFFPAVGNIDTSGISMFEELKKILERRGLKIVLANPGAEVMKKLDKGKFIETLGHEWIYLTVAEAVAACNYMLHSCKPNLVTDEKAEPWNNV 330
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 29209263 29211136 - MELO3C015798.2.1 Cme01g02045 319021
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme01g02045 330 Pfam Sulfate permease family 5 124 IPR011547 GO:0016021
Cme01g02045 330 PANTHER SULFATE TRANSPORTER 4 321 IPR001902 GO:0015301|GO:0016020|GO:0055085
Cme01g02045 330 Gene3D STAS domain 171 312 IPR036513 -
Cme01g02045 330 Pfam STAS domain 180 303 IPR002645 -
Cme01g02045 330 PANTHER BNAA04G05880D PROTEIN 4 321 IPR030311 GO:0008272|GO:0009507|GO:0015116
Cme01g02045 330 ProSiteProfiles STAS domain profile. 176 307 IPR002645 -
Cme01g02045 330 SUPERFAMILY SpoIIaa-like 183 308 IPR036513 -
Cme01g02045 330 CDD STAS_SulP_like_sulfate_transporter 177 300 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme01g02045 Cme-Chr1:29209263 Cme07g00923 Cme-Chr7:9689593 7.60E-121 dispersed
Cme01g02045 Cme-Chr1:29209263 Cme06g00580 Cme-Chr6:3732248 1.35E-168 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme01g02045 K17471 - cmo:103492641 628.246