Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme01g02060 ATGTTTGCTGCAACAATGTCCAATTCAACTTCTTTGTCTGAAGAAGCTGCTAGTGTCTCTTCTACCACAAGAATCCACCCTGATTTCACTTCCTTAAACCCTCTCCTCCCATCCTTTTCTGATATTCATCACCCTCCACAAAAACCCAAGAAGAAACGGAGCCTCCCCGGTAACCCAGACCCGGATGCAGAAGTGATAGCGCTTTCGCCGAAAACACTACTAGCAACAAATAGGTTTGTGTGTGAGATTTGCAACAAGGGTTTTCAAAGGGATCAAAATTTACAATTACATAGGAGAGGACACAACTTGCCATGGAAATTGAAGCAAAGAAACAACAAAGAAGTGAAGAAGAAAGCCTATGTTTGTCCAGAACCAAGTTGTGTTCATCATCATCCTTCAAGAGCCTTAGGAGATCTCACAGGAATTAAAAAACATTACTGCAGAAAACATGGTGAAAAGAAATGGAAATGTGATAAATGTTCCAAAGTTTATGCTGTTCAATCTGATTGGAAAGCTCACTCCAAAACTTGTGGCACTAGAGAATATAGATGTGATTGTGGAACCCTCTTCTCCAGGGTTTCAACTTTGAATTAA 594 40.4 MFAATMSNSTSLSEEAASVSSTTRIHPDFTSLNPLLPSFSDIHHPPQKPKKKRSLPGNPDPDAEVIALSPKTLLATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLKQRNNKEVKKKAYVCPEPSCVHHHPSRALGDLTGIKKHYCRKHGEKKWKCDKCSKVYAVQSDWKAHSKTCGTREYRCDCGTLFSRVSTLN 197
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 29401304 29402449 + MELO3C027075.2.1 Cme01g02060 319036
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme01g02060 197 SUPERFAMILY beta-beta-alpha zinc fingers 78 175 IPR036236 -
Cme01g02060 197 MobiDBLite consensus disorder prediction 1 20 - -
Cme01g02060 197 ProSiteProfiles Zinc finger C2H2 type domain profile. 79 101 IPR013087 -
Cme01g02060 197 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 8 192 - -
Cme01g02060 197 MobiDBLite consensus disorder prediction 36 64 - -
Cme01g02060 197 Pfam Zinc-finger double-stranded RNA-binding 79 101 IPR022755 -
Cme01g02060 197 Gene3D Classic Zinc Finger 75 102 - -
Cme01g02060 197 SMART c2h2final6 155 175 IPR013087 -
Cme01g02060 197 SMART c2h2final6 120 150 IPR013087 -
Cme01g02060 197 SMART c2h2final6 79 101 IPR013087 -
Cme01g02060 197 PANTHER PROTEIN INDETERMINATE-DOMAIN 12 8 192 - -
Cme01g02060 197 ProSitePatterns Zinc finger C2H2 type domain signature. 81 101 IPR013087 -
Cme01g02060 197 Gene3D Classic Zinc Finger 113 197 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme01g02060 Cme-Chr1:29401304 Cme11g00875 Cme-Chr11:11738322 2.37E-98 dispersed
Cme01g02060 Cme-Chr1:29401304 Cme08g00831 Cme-Chr8:5504754 1.09E-97 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
40786 PF12171 zf-C2H2_jaz 4.50E-05 CL0361 Cme TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme01g02060 K25870 - csv:101208253 412.535