Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme01g02227 ATGGCGACGAGGAATCGAACTGCACAGTTTAGAAGGCACAGGGATGCCGTGAAGAGTGTCCGTGCGCCTCTATCCTCTTCGGCAGCTGGCTCCAGTGGACCGGTTATTGAGATGGTCAGTTCGTCTCTTCTTCGTTCGAAGCGCTCTTCTTCATATGCTCCCCTCAGCACTGAAGATCCAGGACCTTCGAGCAGCGATGCATTTATGGTTGGTCTACCTCCAGCTTGGGTGGATGATTCTGAAGAAATAACTGTTAATATACAGAAAATTCGTAGGAAGATGGCAGAGCTAGTCAAGGCTCATTCCAAAGCTTTAATGCCTTCTTTTGCTGATGGCAAAGAAGACGAGCATACGATTGAAGCACTTACGCTAGAGATTACCAATCTTTTGAAAACCTCCGAGAAGAGGTTAAAGAAAATTTCTAGTACTGGGTCTTCCGAGGATATTAACATCAGAAAAAACGTCCAGCGTTCTCTTGCTACAGAGCTTCAGAATCTTTCGATGGATCTTCGTAGAAGACAATCAATGTATTTGAAACATCTGCAACAGCAAAAGGAGGGACATGATGGAATTGATTTGGAGATAAATTTGAATGGAAACCGAACTTTCCAGGAGGATGACGGATATGATGAATTTGGAACAAATGAAAACCAAACGATGACATTAGATGGGCAGCACATTCAGGGAAGGGAGAAAGAGATTAAACAGGTTGTAAAATCCGTAAATGAGCTTGCCCAAATTATGAAGGATCTCTCAACTCTTGTCATAGACCAGGGTACCATTGTCGATAGAATTGACCACAATATTCAGAATGTTGCTGTTTCAGTTGAAGAGGGCTTGAAACAACTTCAAAAGGCAGAGAAGACACAGAAAAATGGAGGAATGGTGAAATGTGCAACAGTGCTTGCCCTTCGCAGCTCTGAAAATCAACAATGGGATATCATCAAAGCAAACCTCACGGCTCCAAACGCAAACAGAGATAAGGACTTTCCAAAATGGTGGGACGATGAGGATATTAAGGAGGTGTCCGTCCATCTAATGAAGATGTGA 1050 43.33 MATRNRTAQFRRHRDAVKSVRAPLSSSAAGSSGPVIEMVSSSLLRSKRSSSYAPLSTEDPGPSSSDAFMVGLPPAWVDDSEEITVNIQKIRRKMAELVKAHSKALMPSFADGKEDEHTIEALTLEITNLLKTSEKRLKKISSTGSSEDINIRKNVQRSLATELQNLSMDLRRRQSMYLKHLQQQKEGHDGIDLEINLNGNRTFQEDDGYDEFGTNENQTMTLDGQHIQGREKEIKQVVKSVNELAQIMKDLSTLVIDQGTIVDRIDHNIQNVAVSVEEGLKQLQKAEKTQKNGGMVKCATVLALRSSENQQWDIIKANLTAPNANRDKDFPKWWDDEDIKEVSVHLMKM 349
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 30993003 30999621 - MELO3C015953.2.1 Cme01g02227 319203
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme01g02227 349 CDD SNARE_syntaxin16 227 285 - -
Cme01g02227 349 PANTHER SYNTAXIN OF PLANTS PROTEIN 1 303 - -
Cme01g02227 349 PANTHER SYNTAXIN 1 303 IPR045242 -
Cme01g02227 349 Gene3D - 73 278 - -
Cme01g02227 349 Pfam SNARE domain 260 304 IPR000727 -
Cme01g02227 349 SUPERFAMILY t-snare proteins 72 279 IPR010989 GO:0016020|GO:0016192
Cme01g02227 349 SMART SynN_4 67 182 IPR006011 GO:0016020
Cme01g02227 349 ProSitePatterns Syntaxin / epimorphin family signature. 230 269 IPR006012 GO:0005484|GO:0006886|GO:0016020
Cme01g02227 349 SMART tSNARE_6 218 286 IPR000727 -
Cme01g02227 349 MobiDBLite consensus disorder prediction 1 33 - -
Cme01g02227 349 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 224 286 IPR000727 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme01g02227 Cme-Chr1:30993003 Cme05g01576 Cme-Chr5:24990079 2.26E-135 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme01g02227 K08489 - csv:101204192 559.296