Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme01g02233 ATGTCTTCCGATTCTCATGCCCCTACTCCAAGGGGTCTTCTCTGTAATGCTGGAGCTGGTGCTGCTGCTGGTGTTCTTGCTGCTACGTTTGTGTGCCCTTTGGATGTTATCAAGACTAGATTTCAGGTTCATGGACTGCCAAACATCGGTAAAGGGAGTCTTATAGTTGGCAGTCTGCAACAAATTTTTCATAAGGAGGGGCTACGTGGAATGTATAGAGGTCTTGCACCTACGGTGCTTGCATTACTGCCTAACTGGGCTGTTTATTTCACAATATATGGGCAGCTTAAAACCTTTCTTGGCTCTGATGACGAACATTGTCAGCTTTCAATAGGTGCTAATATGATGGCTGCTTCTGGTGCTGGGGCTGCTACAACTATTGCAACCAATCCTCTATGGGTAGTCAAGACCAGGCTTCAGACACAGGGAATGAAATCTGGTGTGCTACCATATAGAAATACAGTGTCTGCCTTAAAGAGAATAGCATCTGAAGAAGGCATTCGTGGATTGTACAGGTTTGCTCTTTATTATTATGTTGCTATTCTCATCAATGTATTTTATATGGAGAAGAGCATTATAAGGATATTTTACTCAACTCTAACATTCGATACCGTGTTCTGCAGTGGTCTTGTGCCTGCTTTGGCCGGTGTAAGTCACGTTGCAATTCAGTTTCCAACATATGAAAAAATTAAAAGTTATTTGGCTAGTAGAGACAATACGACAACGGACAAACTCACTGCACGTGATGTTGCGGTTGCCTCATCTGTCTCCAAGATATTTGCTTCCACGTTGACCTATCCACATGAGGTTGTACGATCCAGGCTTCAGGAACAGGGGTTTCACTCCGAAAAGCGTTATTCAGGCGTAGCTGATTGCGTAAAGAAAGTATTTCAGCAAGATGGTCTCCCTGGTTTCTATCGAGGGTGTGCAACCAACCTTCTCAGGACAACGCCTGCTGCTGTCATCACATTTACGAGCTTTGAAATGATTCACCGATTTCTTGTCAACTTATTTCCTCCCGATCCACATCCACACACATTATGA 1044 43.77 MSSDSHAPTPRGLLCNAGAGAAAGVLAATFVCPLDVIKTRFQVHGLPNIGKGSLIVGSLQQIFHKEGLRGMYRGLAPTVLALLPNWAVYFTIYGQLKTFLGSDDEHCQLSIGANMMAASGAGAATTIATNPLWVVKTRLQTQGMKSGVLPYRNTVSALKRIASEEGIRGLYRFALYYYVAILINVFYMEKSIIRIFYSTLTFDTVFCSGLVPALAGVSHVAIQFPTYEKIKSYLASRDNTTTDKLTARDVAVASSVSKIFASTLTYPHEVVRSRLQEQGFHSEKRYSGVADCVKKVFQQDGLPGFYRGCATNLLRTTPAAVITFTSFEMIHRFLVNLFPPDPHPHTL 347
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 31013632 31017023 + MELO3C015958.2.1 Cme01g02233 319209
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme01g02233 347 Gene3D Mitochondrial carrier domain 190 337 IPR023395 -
Cme01g02233 347 Gene3D Mitochondrial carrier domain 1 189 IPR023395 -
Cme01g02233 347 PANTHER NICOTINAMIDE ADENINE DINUCLEOTIDE TRANSPORTER 1, CHLOROPLASTIC 1 172 - -
Cme01g02233 347 ProSiteProfiles Solute carrier (Solcar) repeat profile. 11 99 IPR018108 -
Cme01g02233 347 Pfam Mitochondrial carrier protein 15 102 IPR018108 -
Cme01g02233 347 Pfam Mitochondrial carrier protein 109 172 IPR018108 -
Cme01g02233 347 Pfam Mitochondrial carrier protein 251 335 IPR018108 -
Cme01g02233 347 PANTHER MITOCHONDRIAL NICOTINAMIDE ADENINE DINUCLEOTIDE TRANSPORTER 1-RELATED-RELATED 1 172 IPR044712 GO:0006862|GO:0055085
Cme01g02233 347 PRINTS Mitochondrial carrier protein signature 16 29 IPR002067 GO:0055085
Cme01g02233 347 PRINTS Mitochondrial carrier protein signature 29 43 IPR002067 GO:0055085
Cme01g02233 347 PRINTS Mitochondrial carrier protein signature 74 94 IPR002067 GO:0055085
Cme01g02233 347 PRINTS Mitochondrial carrier protein signature 254 276 IPR002067 GO:0055085
Cme01g02233 347 PRINTS Mitochondrial carrier protein signature 124 142 IPR002067 GO:0055085
Cme01g02233 347 ProSiteProfiles Solute carrier (Solcar) repeat profile. 245 333 IPR018108 -
Cme01g02233 347 ProSiteProfiles Solute carrier (Solcar) repeat profile. 109 203 IPR018108 -
Cme01g02233 347 PANTHER NICOTINAMIDE ADENINE DINUCLEOTIDE TRANSPORTER 1, CHLOROPLASTIC 207 346 - -
Cme01g02233 347 SUPERFAMILY Mitochondrial carrier 207 329 IPR023395 -
Cme01g02233 347 PANTHER MITOCHONDRIAL NICOTINAMIDE ADENINE DINUCLEOTIDE TRANSPORTER 1-RELATED-RELATED 207 346 IPR044712 GO:0006862|GO:0055085
Cme01g02233 347 SUPERFAMILY Mitochondrial carrier 13 175 IPR023395 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme01g02233 Cme-Chr1:31013632 Cme09g01426 Cme-Chr9:19462240 1.45E-109 dispersed
Cme04g01083 Cme-Chr4:14812778 Cme01g02233 Cme-Chr1:31013632 2.37E-17 dispersed
Cme01g02233 Cme-Chr1:31013632 Cme10g00935 Cme-Chr10:6996882 1.01E-07 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme01g02233 K15115 - csv:101204681 574.704