Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme01g02237 ATGGCTGCCGGAACCACCGCCGCCGCATTCTACGTTCTAATCCTCATTTCCCTTTACATCACCACTTCCGCCTCCCCCACCGGTTCCGTTTGCAGCTCAACTCCAGACCCGTCGTATTGCAAATCGGCCCTCCCGAACCAAACCGGAAATGTCTACTCGTACGGACGGTCGTCATTCAGAAAGTCACTGTCGTCGTCACAGAAGTTCCTCCGGCTAGTGGAGAAGCACCTCCGGTCCCGATCGTCGCTGACGGTGGCGGCGGTGAGGGCGTTGGAGGACTGCCAGCTGCTAGCGGGACTGAACATTGATTACCTGAGGACGTCGTTCCAGGCAGTGAACGCGACGAGCAGAGCATTGACGGAGATGAAGGCGGACGATGTGCAGAGTCTGCTGAGTGCGATATTGACGAATCAACAGACTTGTTTGGACGGAATTAAGGCGACGGCGGGTTCTTGGTCGCTTAAAAATGGCCTTTCTCAACCACTTGCTTCTGACACCAAGCTGTACTCTCTGTCTTTGGCCTTCTTCACAAAAGGTTGGGTTCCGAAGAAGAAGAAAAAGCCGACATGGAAAGCCGCGGGAAGACAAGGCGGGTTTAGAAACGGACGAATGTCACTCAAAATGTCCAGCAGAACCCAGGCCATTTACGAGACGGCCACCCGCCGGAATCTGCTGCAGACTGACGACGACGGCGGCGATGACGACCAGATTGCGGTCAGGGACATCGTCGTTGTCAGTCAAGACGGCACCGGAAATTTCACGACCATCAACGAGGCCATTGCGGCAGCGCCCAACAACTCTGCTCCTACGGACGGGTATTTCTTGATCTTCGTGTCCGCGGGAGTTTATGAAGAGTATGTGTCAATTGCTAAGAACAAGAGATACTTGATGATGATCGGAGATGGCATTAATCAGACCATCGTCACCGGTAATCGGAGCGTCGTTGACGGCTGGACCACTTTCAATTCCGCCACTTTTGCGGTGGTCGGACCTGGATTCGTAGCAGTAAACATGACATTCCGAAACACCGCCGGAGCCATAAAGCACCAAGCAGTCGCCCTCCGTAACGGCGCCGACTTATCAACATTCTACCTCTGTAGCTTCGAAGCATATCAAGACACCTTATACACTCATTCCCTCCGCCAATTCTATCGCGACTGTGACATCTACGGCACCGTCGACTTCATCTTCGGCAATGCCGCCGTCGTCTTCCAGAACTGCAACATTTACCCACGCCTTCCAATGTCCAACCAGTTCAACGCCATCACCGCCCAAGGCCGGACCGACCCAAATCAGAACACCGGCACCTCGATCTACAATTGCCGAATCACGGCCGCCGACGATCTGGCGAACAACAGCGGCGCCGGCGTGAAGACTTTCCTGGGACGGCCGTGGAAGGAGTACTCGAGGACGGTTTATATGCAGAGCTTTATGGATGATTTGATTAATCCGGCGGGATGGAGAGCTTGGGATGGGGATTTTGCATTGAATACTTCGTATTATGCGGAATTTGGGAATTTTGGGCCGGGATCTAACACGTCGGAGAGGGTTAATTGGCCGGGATTTCATTTGATCAATGATACCGATGCTGGGAATTTCACGGCCGGGAATTTCGTGTTGGCGGATGATTGGCTGCCGCAGACCGGCGTTCCATATACTAGCGGCCTGACGGAGTAG 1677 53.85 MAAGTTAAAFYVLILISLYITTSASPTGSVCSSTPDPSYCKSALPNQTGNVYSYGRSSFRKSLSSSQKFLRLVEKHLRSRSSLTVAAVRALEDCQLLAGLNIDYLRTSFQAVNATSRALTEMKADDVQSLLSAILTNQQTCLDGIKATAGSWSLKNGLSQPLASDTKLYSLSLAFFTKGWVPKKKKKPTWKAAGRQGGFRNGRMSLKMSSRTQAIYETATRRNLLQTDDDGGDDDQIAVRDIVVVSQDGTGNFTTINEAIAAAPNNSAPTDGYFLIFVSAGVYEEYVSIAKNKRYLMMIGDGINQTIVTGNRSVVDGWTTFNSATFAVVGPGFVAVNMTFRNTAGAIKHQAVALRNGADLSTFYLCSFEAYQDTLYTHSLRQFYRDCDIYGTVDFIFGNAAVVFQNCNIYPRLPMSNQFNAITAQGRTDPNQNTGTSIYNCRITAADDLANNSGAGVKTFLGRPWKEYSRTVYMQSFMDDLINPAGWRAWDGDFALNTSYYAEFGNFGPGSNTSERVNWPGFHLINDTDAGNFTAGNFVLADDWLPQTGVPYTSGLTE 558
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 31038204 31040838 - MELO3C015962.2.1 Cme01g02237 319213
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme01g02237 558 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 29 178 IPR035513 -
Cme01g02237 558 SUPERFAMILY Pectin lyase-like 238 555 IPR011050 -
Cme01g02237 558 PANTHER PECTINESTERASE/PECTINESTERASE INHIBITOR 7-RELATED 12 556 - -
Cme01g02237 558 Pfam Plant invertase/pectin methylesterase inhibitor 29 174 IPR006501 GO:0004857
Cme01g02237 558 Gene3D - 237 556 IPR012334 -
Cme01g02237 558 Gene3D Invertase/pectin methylesterase inhibitor family protein 27 178 IPR035513 -
Cme01g02237 558 PANTHER PECTINESTERASE 12 556 - -
Cme01g02237 558 CDD PMEI-like_3 29 177 - -
Cme01g02237 558 SMART PMEI_2 21 175 IPR006501 GO:0004857
Cme01g02237 558 Pfam Pectinesterase 243 540 IPR000070 GO:0030599|GO:0042545
Cme01g02237 558 ProSitePatterns Pectinesterase signature 2. 389 398 IPR033131 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme01g02237 Cme-Chr1:31038204 Cme04g00242 Cme-Chr4:1915220 0 dispersed
Cme01g02237 Cme-Chr1:31038204 Cme01g02238 Cme-Chr1:31058209 2.04E-138 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme01g02237 K01051 - csv:101205321 1049.27