Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme01g02238 TATCTTCATCCACTCGCCTCTTCAACACCCATATCCAACTCTCCCCCTTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTCCTCTGTTTCAGACATGTACGGCCTGAGAAACAGAGCTCAAATCTCTTCAAATCCCACCTCCATTTCCACCATTTCCACTTTCTTCTTCATTTTCTTCCTCTTCTCCTCCAAACCCATTTCTTCAAATCCTCAAATCCATCAAACCGCTCGATCCCTTTGCAATGGCACTCTCTTCCCAAACCTCTGTTTTTCTAAACTCTCTTCTTTTCCCCAATTGGCTTCCCTCTCCCCGGAAAAGCTCGCCGGCAGTGCCCTCAACTTCACTACCCGCGAGGTCCTCCTTGCCTACGCCAATTGCACCAACCTCAAGACTCATCTTTACTGTGGCTTGAATCCCACCGACCGCCACGCCCTCGACGACTGTCTTGAGCTTCTAGACGACAGCATTGCAGAGCTCAAAGCTTCGATCTTGGATCTGGGGCCGTCGCAGTCCGCCGCTCGTCACTCCCATGATTTGTTGACATTGGTCAGCGCCGCCATGACCAACCACCGAACTTGTGTTGATGGGTTTTATAATAGTTCGGGGACTGTGAGGAGTAGGGTGGAGCTTTATTTGGGGAAAATTGGACAGCATTTAAGTATTGATTTGGCAATGTTGAAGAAAATCCCGGGAGTTAATAGGGCTACGAAGGTAGAGGAGGTGTTGCCGGAGTATGGGGCAGTGAAAGGTGGGTTTCCGAAGTGGGTTTCGGTTAAGGATCGGAGATTGTTGCAAGCGGCGGTGAATGAGACAAAGTTCAATTTGGTGGTGGCGAAGGATGGCTCCGGGAATTTCACCACTGTGAACGAGGCTGTCGCCGCCGCTCCGAATTCGAGCACCACCAGGTTTGTAATCTACATAAAAGCAGGGGCGTATTTTGAGAACGTGGAAATAGGAAGGGCAAAGTCAAACTTGATGTTCGTGGGCGACGGAATCGGAAAGACGCTGATAAAGGGCGACAGGAATGTGGTCGACGGGTGGACTACTTTCCGATCAGCCACCGTCGCGGTGGTTGGCACTGGGTTCATAGCAAAAGGTATAACATTTGAAAATTATGCGGGTCCAAGCAAGCACCAAGCTGTAGCCTTACGAAGCAACTCTGACTTCTCTGCGTTTTACCAGTGTAGTTTCATTGGCTATCAAGACACTCTCTACGTTCACTCCCTCCGTCAATTCTATCGTGAATGCGATATCTACGGTACCATCGACTTCATTTTCGGTAATGCTGCTGTTGTTTTCCAAAACTGCAACCTTTATGCTCGAAAACCCAACTCAAATCAACGCAACATATTCACTGCTCAAGGTCGCGAGGACCCAAATCAAAACACTGGAATCTCAATCCTCAATTGTAAGGTTGAAGCTGCCTCTGACCTAATCCCAGTTCTTTCCTCGTTTAGAACTTATTTGGGTCGGCCTTGGAAGTTGCACTCGAGGACAGTTTTTCTCCGATCGTTTATCGGGCAGTTGGTTGAACCGGTCGGATGGCTTGAGTGGAATGGGACATTTGCATTGGATACTTTGTATTATGGGGAGTATCTAAACAGGGGGCCCGGTTCGAATACAACCGGACGAGTTACTTGGCCGGGTTATCGAGTTATAACTAACGCAACAGAAGCGAGTCAGTTTACGGTCGAGGAATTTATACAGGGCAGCTCGTGGTTGAACTCAACTGGGATCCCTTTCTTCTCCGGTTTGACTTCACCGTAA 1782 48.37 YLHPLASSTPISNSPPFFFFFFFFFFFFFFFSSVSDMYGLRNRAQISSNPTSISTISTFFFIFFLFSSKPISSNPQIHQTARSLCNGTLFPNLCFSKLSSFPQLASLSPEKLAGSALNFTTREVLLAYANCTNLKTHLYCGLNPTDRHALDDCLELLDDSIAELKASILDLGPSQSAARHSHDLLTLVSAAMTNHRTCVDGFYNSSGTVRSRVELYLGKIGQHLSIDLAMLKKIPGVNRATKVEEVLPEYGAVKGGFPKWVSVKDRRLLQAAVNETKFNLVVAKDGSGNFTTVNEAVAAAPNSSTTRFVIYIKAGAYFENVEIGRAKSNLMFVGDGIGKTLIKGDRNVVDGWTTFRSATVAVVGTGFIAKGITFENYAGPSKHQAVALRSNSDFSAFYQCSFIGYQDTLYVHSLRQFYRECDIYGTIDFIFGNAAVVFQNCNLYARKPNSNQRNIFTAQGREDPNQNTGISILNCKVEAASDLIPVLSSFRTYLGRPWKLHSRTVFLRSFIGQLVEPVGWLEWNGTFALDTLYYGEYLNRGPGSNTTGRVTWPGYRVITNATEASQFTVEEFIQGSSWLNSTGIPFFSGLTSP 593
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 31058209 31060993 + MELO3C015963.2.1 Cme01g02238 319214
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme01g02238 593 TIGRFAM PME_inhib: pectinesterase inhibitor domain 56 233 IPR006501 GO:0004857
Cme01g02238 593 Gene3D - 273 590 IPR012334 -
Cme01g02238 593 Gene3D Invertase/pectin methylesterase inhibitor family protein 80 236 IPR035513 -
Cme01g02238 593 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 82 235 IPR035513 -
Cme01g02238 593 Pfam Pectinesterase 279 575 IPR000070 GO:0030599|GO:0042545
Cme01g02238 593 PANTHER PECTINESTERASE 76 587 - -
Cme01g02238 593 Pfam Plant invertase/pectin methylesterase inhibitor 82 213 IPR006501 GO:0004857
Cme01g02238 593 SMART PMEI_2 76 230 IPR006501 GO:0004857
Cme01g02238 593 PANTHER PECTINESTERASE 76 587 - -
Cme01g02238 593 ProSitePatterns Pectinesterase signature 2. 423 432 IPR033131 -
Cme01g02238 593 CDD PMEI-like_3 83 236 - -
Cme01g02238 593 SUPERFAMILY Pectin lyase-like 277 589 IPR011050 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme01g02238 Cme-Chr1:31058209 Cme09g01983 Cme-Chr9:23683621 3.19E-177 dispersed
Cme06g01137 Cme-Chr6:8755404 Cme01g02238 Cme-Chr1:31058209 1.01E-103 dispersed
Cme10g00186 Cme-Chr10:1255016 Cme01g02238 Cme-Chr1:31058209 3.90E-135 dispersed
Cme12g01636 Cme-Chr12:23511039 Cme01g02238 Cme-Chr1:31058209 4.57E-88 dispersed
Cme01g02237 Cme-Chr1:31038204 Cme01g02238 Cme-Chr1:31058209 2.04E-138 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme01g02238 K01051 - csv:101205557 1040.41