Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme01g02341 ACTTCGCCAACACCATCAAATACCACAAATTCATCCTTCTTTCATTCTATATTCTCTATAAACAAACCCAACAAATTCCTCTTCCCCACAAAAACCCCATCTCAATTTCTTCCAATAGCAATGGCCAGTATCAAAGTCCATGGAAGCCCAATTTCCACTGCCACGTCCAGAGTTCTCGCTTGTCTTTACGAGAAAGATCTCGATTATGAGTTCGTTCTTCTGGATATGAAAAACAACGAGCATAAGAAACACCCCTTTCTCTCCATTAATCCGTTTGGTCAAGTTCCTGGGTTTCAAGATGGGGATCTCACCATTTTCGAATCAAGGGCCATTACTCAATACTTGGCCACGGCCTACGCCAACAAGGGAACCCAGTTGATCCCCAACGACCCAAAGAAAGCGGCGATCGTATCAACGTGGATCGAAGTGGAGGGCCACCATTACGACCCACCTGGGGTGGCTTTGTCGTTCGAGCATCTAGTCAAGCCATTATTTGGCCTCGGCGAAACCGATCCCGCAGCGGTGGCAGAGAATGAAGCCAAGCTGGGGAAAGTTCTTGACATCTACGAGAATCAGCTTAGCAAAAATAAGTTCTTAGCAGGGGATGAATTCAGTTTGGCGGATTTGCACCACATCCCCAATATCAGCTACTTGTTGGCAACACCGTCGAAGAAGCTGTTCGAGTCACGGCCGCGTGTCAACGCTTGGGTGACTGATATCCTTGCAAGGCCTTCGTGGGCTAAGGTAACAGCCTTGCGCAATCAGAGTTAA 771 47.6 TSPTPSNTTNSSFFHSIFSINKPNKFLFPTKTPSQFLPIAMASIKVHGSPISTATSRVLACLYEKDLDYEFVLLDMKNNEHKKHPFLSINPFGQVPGFQDGDLTIFESRAITQYLATAYANKGTQLIPNDPKKAAIVSTWIEVEGHHYDPPGVALSFEHLVKPLFGLGETDPAAVAENEAKLGKVLDIYENQLSKNKFLAGDEFSLADLHHIPNISYLLATPSKKLFESRPRVNAWVTDILARPSWAKVTALRNQS 256
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 31751251 31752880 - MELO3C016033.2.1 Cme01g02341 319317
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme01g02341 256 Gene3D Glutaredoxin 41 127 - -
Cme01g02341 256 SUPERFAMILY Thioredoxin-like 36 128 IPR036249 -
Cme01g02341 256 SFLD Main (cytGST) 41 252 - -
Cme01g02341 256 SFLD Main.5: Phi-like 41 252 - -
Cme01g02341 256 PANTHER GLUTATHIONE S-TRANSFERASE RHO 30 255 - -
Cme01g02341 256 Gene3D - 130 254 - -
Cme01g02341 256 ProSiteProfiles Soluble glutathione S-transferase N-terminal domain profile. 42 123 IPR004045 -
Cme01g02341 256 CDD GST_C_Phi 132 249 IPR034347 -
Cme01g02341 256 CDD GST_N_Phi 44 116 - -
Cme01g02341 256 SUPERFAMILY GST C-terminal domain-like 114 252 IPR036282 -
Cme01g02341 256 Pfam Glutathione S-transferase, C-terminal domain 169 244 IPR004046 -
Cme01g02341 256 ProSiteProfiles Soluble glutathione S-transferase C-terminal domain profile. 130 256 IPR010987 -
Cme01g02341 256 Pfam Glutathione S-transferase, N-terminal domain 49 116 IPR004045 -
Cme01g02341 256 PANTHER GLUTATHIONE S-TRANSFERASE F6-RELATED 30 255 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme01g02339 Cme-Chr1:31744298 Cme01g02341 Cme-Chr1:31751251 3.63E-107 dispersed
Cme01g02341 Cme-Chr1:31751251 Cme03g01542 Cme-Chr3:24540781 5.68E-63 dispersed
Cme01g02340 Cme-Chr1:31749158 Cme01g02341 Cme-Chr1:31751251 1.04E-102 tandem
Cme01g02341 Cme-Chr1:31751251 Cme01g02342 Cme-Chr1:31757729 2.84E-60 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme01g02341 K00799 - csv:101212771 423.705