Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme01g02342 ATGACAGGCGTGAAAGTGTACGGATTGCCGATCTCGACATGCACGTCAACCGTCATGATTTGTCTTCATGAAAAGCAAATTCTTTTCCAACTTCTTCATGTCGACCTTTTCAATGGTGAACACAAGCAACCACCATTTTTGGCTATCAATCCCTTTGGCCAAATTCCAGCCCTAGAAGATTGTGATCTTACCTTATTTGAATCAAGAGCAATCACATCCTACATCGCAAACAAGCACAAGGAAACAGGACCAGATCTTCTATTGCAACACCAAACCCCCAGAGAAGAAGCCATTGTGAAGCAATGGATGGAGGTTGAGTCTCACCACTACAACCCTGCAATAAGTCGTATCATCCATGAGTTCTTCACTGCTCACCTTCGAGGCCACAAGCCCAACCAGCACCTCATTGACCAGAACTTGGAGCACCTAGGCACCGTGCTCGACGTGTACGAGAAGCGCCTAGGAGCCACCAAGTACTTGGCCGGGCCTCGGTACACCTTGGCTGATCTCCACCACCTCCCTTGCACGTTCTACTTCATGAAGACGCCATGGGCTTCAATGATTAATGATCGACCGAATGTCAAGGCTTGGTGGGATAATATTTCATCCCGCCCTGCGTTTCTTAAAGTTATTGAGGGGATGGATAATTTTGATTTTGGTGGTGATAACAAGAAAAAGTGA 681 46.7 MTGVKVYGLPISTCTSTVMICLHEKQILFQLLHVDLFNGEHKQPPFLAINPFGQIPALEDCDLTLFESRAITSYIANKHKETGPDLLLQHQTPREEAIVKQWMEVESHHYNPAISRIIHEFFTAHLRGHKPNQHLIDQNLEHLGTVLDVYEKRLGATKYLAGPRYTLADLHHLPCTFYFMKTPWASMINDRPNVKAWWDNISSRPAFLKVIEGMDNFDFGGDNKKK 226
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 31757729 31759909 - MELO3C016034.2.1 Cme01g02342 319318
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme01g02342 226 PANTHER GLUTATHIONE S-TRANSFERASE F13 3 215 - -
Cme01g02342 226 SFLD Main (cytGST) 1 214 - -
Cme01g02342 226 ProSiteProfiles Soluble glutathione S-transferase C-terminal domain profile. 92 226 IPR010987 -
Cme01g02342 226 PANTHER GLUTATHIONE S-TRANSFERASE RHO 3 215 - -
Cme01g02342 226 SUPERFAMILY GST C-terminal domain-like 74 213 IPR036282 -
Cme01g02342 226 Pfam Glutathione S-transferase, C-terminal domain 117 205 IPR004046 -
Cme01g02342 226 CDD GST_N_Phi 4 78 - -
Cme01g02342 226 CDD GST_C_Phi 95 211 IPR034347 -
Cme01g02342 226 Pfam Glutathione S-transferase, N-terminal domain 4 77 IPR004045 -
Cme01g02342 226 SUPERFAMILY Thioredoxin-like 3 82 IPR036249 -
Cme01g02342 226 Gene3D - 89 211 - -
Cme01g02342 226 SFLD Main.5: Phi-like 1 214 - -
Cme01g02342 226 Gene3D Glutaredoxin 3 87 - -
Cme01g02342 226 ProSiteProfiles Soluble glutathione S-transferase N-terminal domain profile. 2 83 IPR004045 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme01g02340 Cme-Chr1:31749158 Cme01g02342 Cme-Chr1:31757729 7.56E-62 dispersed
Cme01g02342 Cme-Chr1:31757729 Cme03g01542 Cme-Chr3:24540781 1.70E-58 dispersed
Cme01g02341 Cme-Chr1:31751251 Cme01g02342 Cme-Chr1:31757729 2.84E-60 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme01g02342 K00799 - pop:18096457 291.582