Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme01g02346 ATGAGGAGAAAATCCAAAACCCTAAGGACGACGATGGGGACGAGGAGGAAGAAGATGAAAGGGACAGTGACGAGGCACTTGCAGGTTCAGTTAGGGAAGGTTTCACTTGCTCCTCTTCAACTCCACCGCTCCTCTTCTTCCGCTGCTTGCTTCCAGAACTTGCCGGAATCTGAAGCTCCCTCGACGGTCAACGTTTCTGATGCCCTTCCTTCCTCATCTTCTAACTTTGAGGACAGAGATTTCATTCTTAGCCAAGACTTCTTCTGTTGGTTTGAGCTGCTCACCCCTGATTATATCACCCCGGATAATCAAAATTTGTTGAATGGAGTGGATAGCAACAAGGAATGCATTCCCTGCCCCAAATCTCCAGAGAAGATTAATACTGTTAAAACTAAGAGAAAAATACATGAAAATGTTTTAGTACGTCCCCTGAGTCCGAGTTTGTCTGGCTGCGAACAAGTTGTGGAACTTGGAAATGACACTTTTGGATCAGATGACGTGGATATGGAGAAAGAGACCATGGCCATGCCGAAGAAAGAAAGCTATGTATCTCAATCTGCAGTTGCTCTTCGCTGTCGAGTTATGCCTCCTCCTTGCATGAAGAACCCATACTTGGGAGATGCTTCAGATGTAGGCGTAGACCCATTTGGCAATCAACGAACTAAATGTGCAGGATTTTTTCCTGCGTTATTTAGTGGAGATGGTCTTTCAAGATATCACACTGATTTTCATGAGATAAAGCTAATAGGAACTGGAAATTTTAGCCGTGTCTTCAAGGTATTAAAGAGAATTGATGGCTGCTTATATGCTGTTAAGCAAAGCACAAGACCATTGAATCAAGACACGGAAAGGAGGAGAGCTTTGATGGAGGTTCAAGCTTTGGCAGCTTTAGGGTCGCATGAAAACATTGTTGGATACTATACTTCATGGTTTGAAAATGAACAACTCTACATTCAAATGGAGCTCTGTGATTGTAGTTTATCAATGGGCACGTATTCTCACCCATTCTCTGAGGTAGATGCGCTGAGAGCCTTATATCAGATTGCGAAGGCATTGCTATTTGTGCACGAGAAAGGAATAGCTCATTTAGATGTGAAACCTGACAATATTTATATCAAAGATGGTGTCTATAAACTTGGTGATTTTGGGTGTGTTACCCTTCTTGATAAGAGTCTGCCTATTGAGGAGGGTGATGCACGCTATATGCCTCAAGAAATTCTGAATGAAAGATATGATTATCTTGATAAAGTTGATATTTTCTCCTTGGGAGCTGCTATTTATGAGATTGTCAGAGGATTCACTTTACCAGAAACGCATTTCATGAACCTTAAGGAGGGAAAATTGCCACTCCTTCCTGGTCATTCATTGCAATTTCAAAACTTAATCAAGGCTATGGTGGATCCCAACCCAACACGGCGTCCTTCGGCAAGGGAAGTTCTTGAGAATCCGATATTTGATAAGGTCAGAACTCACAAACAATCATAG 1485 42.36 MRRKSKTLRTTMGTRRKKMKGTVTRHLQVQLGKVSLAPLQLHRSSSSAACFQNLPESEAPSTVNVSDALPSSSSNFEDRDFILSQDFFCWFELLTPDYITPDNQNLLNGVDSNKECIPCPKSPEKINTVKTKRKIHENVLVRPLSPSLSGCEQVVELGNDTFGSDDVDMEKETMAMPKKESYVSQSAVALRCRVMPPPCMKNPYLGDASDVGVDPFGNQRTKCAGFFPALFSGDGLSRYHTDFHEIKLIGTGNFSRVFKVLKRIDGCLYAVKQSTRPLNQDTERRRALMEVQALAALGSHENIVGYYTSWFENEQLYIQMELCDCSLSMGTYSHPFSEVDALRALYQIAKALLFVHEKGIAHLDVKPDNIYIKDGVYKLGDFGCVTLLDKSLPIEEGDARYMPQEILNERYDYLDKVDIFSLGAAIYEIVRGFTLPETHFMNLKEGKLPLLPGHSLQFQNLIKAMVDPNPTRRPSAREVLENPIFDKVRTHKQS 494
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 31783954 31788220 + MELO3C016039.2.1 Cme01g02346 319322
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme01g02346 494 SMART serkin_6 243 485 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme01g02346 494 PANTHER BNAA08G27310D PROTEIN 19 401 - -
Cme01g02346 494 PANTHER BNAA08G27310D PROTEIN 414 490 - -
Cme01g02346 494 ProSitePatterns Protein kinases ATP-binding region signature. 249 272 IPR017441 GO:0005524
Cme01g02346 494 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2-ALPHA KINASE EIF2-ALPHA KINASE -RELATED 19 401 - -
Cme01g02346 494 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2-ALPHA KINASE EIF2-ALPHA KINASE -RELATED 414 490 - -
Cme01g02346 494 SUPERFAMILY Protein kinase-like (PK-like) 236 489 IPR011009 -
Cme01g02346 494 ProSiteProfiles Protein kinase domain profile. 243 485 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme01g02346 494 Pfam Protein kinase domain 243 485 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme01g02346 494 Gene3D Phosphorylase Kinase; domain 1 233 322 - -
Cme01g02346 494 Gene3D Transferase(Phosphotransferase) domain 1 323 490 - -
Cme01g02346 494 ProSitePatterns Serine/Threonine protein kinases active-site signature. 360 372 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme01g02346 Cme-Chr1:31783954 Cme06g00496 Cme-Chr6:3118936 1.40E-22 dispersed
Cme01g02346 Cme-Chr1:31783954 Cme06g00555 Cme-Chr6:3506603 8.19E-18 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
64631 PF00069 Pkinase 6.70E-47 CL0016 Cme PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme01g02346 K06632 - csv:101213255 948.347