Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme01g02349 ATGGATGAAAACACAGGCATGCCAGAGAGATCCGTAGAATTTAAGTACGATTTCACCGGCGGTGGCAGTAGCGGAGTTGGTGGTAGCACAGGTGGTTCGAGTGAGGAAGCCGGTAACGGCGTTGGCGGGGTTGTAAAAGAGCAAGATCGGTTACTTCCAATAGCAAATGTGGGGAGGATAATGAAGCAAATTCTACCTCCAAATGCCAAAATCTCAAAAGAAGCTAAAGAAACTATGCAAGAATGCGTGTCGGAGTTCATCAGTTTCGTGACGGGGGAAGCGTCAGATAAGTGCCACAAGGAGAAGAGGAAGACTGTTAATGGTGATGATATTTGCTGTGCTTTGGCTACACTTGGATTTGATGATTATGCTGAGCCTTTGAGAAGGTATTTGGTTAGGTATAGAGATATGGAAGGGGAAAGAGCTCAACAAAATAAGGGATGTTGCAATAATAATAATAATAATAATAATAATAATAATGGATGA 486 42.39 MDENTGMPERSVEFKYDFTGGGSSGVGGSTGGSSEEAGNGVGGVVKEQDRLLPIANVGRIMKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDICCALATLGFDDYAEPLRRYLVRYRDMEGERAQQNKGCCNNNNNNNNNNNG 161
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 31831207 31831859 - MELO3C016042.2.1 Cme01g02349 319325
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme01g02349 161 Gene3D Histone, subunit A 43 160 IPR009072 GO:0046982
Cme01g02349 161 ProSitePatterns NF-YB/HAP3 subunit signature. 82 98 IPR003956 GO:0005634|GO:0006355|GO:0043565
Cme01g02349 161 PRINTS CCAAT-binding transcription factor subunit A signature 79 97 - -
Cme01g02349 161 PRINTS CCAAT-binding transcription factor subunit A signature 98 116 - -
Cme01g02349 161 PRINTS CCAAT-binding transcription factor subunit A signature 117 135 - -
Cme01g02349 161 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-5 34 158 - -
Cme01g02349 161 MobiDBLite consensus disorder prediction 1 43 - -
Cme01g02349 161 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 34 158 IPR027113 GO:0001228|GO:0006355|GO:0016602
Cme01g02349 161 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 51 115 IPR003958 -
Cme01g02349 161 SUPERFAMILY Histone-fold 48 157 IPR009072 GO:0046982
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme01g02349 Cme-Chr1:31831207 Cme06g02755 Cme-Chr6:34811100 1.41E-52 dispersed
Cme01g02349 Cme-Chr1:31831207 Cme10g00818 Cme-Chr10:5367123 8.04E-48 transposed
Cme01g02349 Cme-Chr1:31831207 Cme04g02561 Cme-Chr4:31731751 1.26E-48 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
40796 PF00808 CBFD_NFYB_HMF 7.00E-27 CL0012 Cme TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme01g02349 K08065 - csv:101204763 284.648