Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme01g02350 ATGGAAGATCAGTTAGAAGAAGTTGAACAAAACAACAATAATAATCAACATCAGCTTCTTAACCACTTCCTCTATGGCTCTCCCAATGGAGATCAAACCAATTCCCATGGCTCATCTAATTCCCTTGATCACCACCAACAAAGATCAGTCAAGAAGAAGCGTAACCTTCCCGGCACTCCAGATCCAAATGCTGAAGTTATTGCTTTATCACCAACAACCCTAATGGCTAGAAATAGGTTTGTGTGTGAGATTTGCAACAAGGGGTTTCAAAGAGATCAAAACCTTCAATTGCATAGAAGAGGCCACAACCTTCCATGGAAACTCCGGCAAAGGACCGGTGCCGAAGTGAAGAAAAGGGTCTACGTATGCCCCGAACCGACATGTGTTCATCACAACCCGGCTCGAGCTCTCGGCGATCTCACTGGAATTAAGAAGCATTTTAGTAGAAAGCATGGGGAGAAGAAATGGAAGTGTGAGAAATGTTCCAAGAAATATGCAGTTCAGTCTGATTTGAAAGCTCATCAAAAGACTTGTGGCACGAGGGAATACAAATGTGATTGTGGAACTCTCTTTTCCAGAAGGGACAGCTTCATCACCCACAGAGCCTTTTGCAATGCATTAACAGAAGAAAGCAACAAACTAAAGCAAGGAATTCTCAGCAGCAACAACAATAACAATAACATAGAACCAATCTCAATTATCTCCACTCCAAAGCTTCCTCATTTTGGCACATCAATCATGCCTGAATTCAACCCTTATGATCAAAAAACCCCTTTCAAATCCCTCCCCCAAGAACTCAACAACTCGACCCCGACCACTGGCGCACCCGGAGGCTTGTTCATGGGCGGACATTACCGAAACAACAACAATTCTTCCTCTCTCTCAAGCCTTAAGCTCAGCTCCACCACCTCTTCGCGCTTTAGTTGTCTTTATGATAGTAAAAATGGCTGCCTTCAGGATACCGAGTCGGGAACAGCCACATTGGTTACATCGGCCACGGCCCTGTTGCAAAAAGCTGCACAGATAGGAGCAACCAAAAGCTCTGTTGGTGTTTTGAAGTCACCATTGATGGAAATGCCACATTCTGATCATCAACCAGACATGGTAGGAATGAATATGGGAATGTATGGACATATGATGATGATGAAAGAACAAGATCATAACTGTAGTACCAACAGCTCGAGTTTTGTTGGCCCCGAAAAGGGCCAGTGGCGACCGATATCGAGATTTTCAGGTGGTGGTAGTGGATCAGGCGAAGAGAATCAAATGATGACTTTGGATTTGTTGGGAGAAAGAGGGTGGAGGTTGAGACATTTGCAAGGAGATGAAAGTAGCCACCACTATCACCAGCAGGAGATGGTGCCAATTATGAAGCATTTTGAGATGCAAAGCTTTCATGGGGATTCTTCAAATGTTGACAAATCCATATTTGAGTTTTGA 1440 43.96 MEDQLEEVEQNNNNNQHQLLNHFLYGSPNGDQTNSHGSSNSLDHHQQRSVKKKRNLPGTPDPNAEVIALSPTTLMARNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLRQRTGAEVKKRVYVCPEPTCVHHNPARALGDLTGIKKHFSRKHGEKKWKCEKCSKKYAVQSDLKAHQKTCGTREYKCDCGTLFSRRDSFITHRAFCNALTEESNKLKQGILSSNNNNNNIEPISIISTPKLPHFGTSIMPEFNPYDQKTPFKSLPQELNNSTPTTGAPGGLFMGGHYRNNNNSSSLSSLKLSSTTSSRFSCLYDSKNGCLQDTESGTATLVTSATALLQKAAQIGATKSSVGVLKSPLMEMPHSDHQPDMVGMNMGMYGHMMMMKEQDHNCSTNSSSFVGPEKGQWRPISRFSGGGSGSGEENQMMTLDLLGERGWRLRHLQGDESSHHYHQQEMVPIMKHFEMQSFHGDSSNVDKSIFEF 479
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 31852549 31856631 + MELO3C016043.2.1 Cme01g02350 319326
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme01g02350 479 MobiDBLite consensus disorder prediction 21 44 - -
Cme01g02350 479 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 30 390 - -
Cme01g02350 479 ProSiteProfiles Zinc finger C2H2 type domain profile. 80 102 IPR013087 -
Cme01g02350 479 ProSiteProfiles Zinc finger C2H2 type domain profile. 156 184 IPR013087 -
Cme01g02350 479 Gene3D Classic Zinc Finger 135 214 - -
Cme01g02350 479 Gene3D Classic Zinc Finger 2 107 - -
Cme01g02350 479 SMART c2h2final6 80 102 IPR013087 -
Cme01g02350 479 SMART c2h2final6 156 176 IPR013087 -
Cme01g02350 479 SMART c2h2final6 121 151 IPR013087 -
Cme01g02350 479 ProSitePatterns Zinc finger C2H2 type domain signature. 82 102 IPR013087 -
Cme01g02350 479 SUPERFAMILY beta-beta-alpha zinc fingers 79 177 IPR036236 -
Cme01g02350 479 MobiDBLite consensus disorder prediction 21 65 - -
Cme01g02350 479 PANTHER PROTEIN INDETERMINATE-DOMAIN 2-LIKE 30 390 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme01g02350 Cme-Chr1:31852549 Cme02g00092 Cme-Chr2:707240 1.85E-106 dispersed
Cme01g02350 Cme-Chr1:31852549 Cme11g00875 Cme-Chr11:11738322 1.19E-114 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
40797 None None None None Cme TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme01g02350 - - csv:101205011 822.002