Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme01g02385 ATGGTGGCTGAAGCTGAGGTTGTTGTTTGTTCGAAGAGCCTCCCGGTTTTGGAGGTCCCGTATTTTGGTAAAGAGACTTGTCTTGTTGATGAAATTGAGTCCATCGATGGTGGGATTTCGATTGATCCGACTCTTGATCGTGTTCGTGCTTTCGAGTCGGTTTGTTCCAGTTCTCAATCGGATAAACCCATGAAGAAAATTCCAGACTCCGAGGTCGATACGGCCAACGGAAGGGAATTTCCGAGCCTCCGGTCGGGGAGTTTTGCTGATATTGGACCTAGGAGATACATGGAAGATGAACATATAAGGATAGATGATTTATCTTCACACTTAGGATCGTTCTTCAAGTTTCCCAAGCCAAGTGCTTTCTATGGGGTATTCGATGGACATGGAGGTCCTGAAGCTGCAGCTTATATCAGAAAGAATGTTCTTAGACTCTTTTTCGAGGATGTTAGTTTCCCTCAAATTCCAGATATGGATGAAATCTTGCCGGAGGAGATTGAAACTTGCCTCCGAAAAGCATTTCTTCTTGCTGATCGAGCTCTTGCTGATGATTCCAGTGTCAGTAGCTCGTCCGGGACGACGGCCCTGACAGCTCTTGTTCTTGGAAGGCTTTTAATGGTGGCAAATGCTGGAGACTGCCGAGCAGTTCTCAGCCGGAATGGAGAGGCAGTAGATATGTCTCAAGACCACCGGCCGATTTATTCTCTGGAGAAGCAACGAGTAGAAGAGTTGGGTGGCTATGTTGATGGTGGCTATCTCAATGGCGTTTTATCGGTTTCTAGGGCCTTGGGGGATTGGGACATGAAGCTCCCAGATGGTACACCTTCTCCTCTCATTGCAGAACCAGAATGCAGACAGATGGTTCTTACAGAAGAGGATGAGTTCTTGATCATAGCCTGTGACGGGATATGGGACGTGATGTCAAGCCAGCAAGCAGTCAATGTAGTTCGACAGGGACTTCAACGCCACGACGACCCTGAGCGCTGTGCAAGAGACCTTGTCCTGCAGGCTTTGCGATTAGACTCGTTCGATAACCTAACTGTTGTTGTTGTTTGCTTCTCCAGTTTCCATCCCGGCAATTCTCCACTACCACAGCAGCGGAAGTTACGATACTGCAGCCTCTCAGCACAGGCTCTTTGTAGCTTGCAAAAATGGTTGGATAACAGTGGATGTCAATGA 1182 47.72 MVAEAEVVVCSKSLPVLEVPYFGKETCLVDEIESIDGGISIDPTLDRVRAFESVCSSSQSDKPMKKIPDSEVDTANGREFPSLRSGSFADIGPRRYMEDEHIRIDDLSSHLGSFFKFPKPSAFYGVFDGHGGPEAAAYIRKNVLRLFFEDVSFPQIPDMDEILPEEIETCLRKAFLLADRALADDSSVSSSSGTTALTALVLGRLLMVANAGDCRAVLSRNGEAVDMSQDHRPIYSLEKQRVEELGGYVDGGYLNGVLSVSRALGDWDMKLPDGTPSPLIAEPECRQMVLTEEDEFLIIACDGIWDVMSSQQAVNVVRQGLQRHDDPERCARDLVLQALRLDSFDNLTVVVVCFSSFHPGNSPLPQQRKLRYCSLSAQALCSLQKWLDNSGCQ 393
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 32216538 32218525 + MELO3C023626.2.1 Cme01g02385 319361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme01g02385 393 SUPERFAMILY PP2C-like 79 356 IPR036457 -
Cme01g02385 393 PANTHER PROTEIN PHOSPHATASE 2C 1 373 IPR015655 GO:0004722|GO:0006470
Cme01g02385 393 CDD PP2Cc 84 354 IPR001932 -
Cme01g02385 393 PANTHER PROTEIN PHOSPHATASE 2C 49-RELATED 1 373 - -
Cme01g02385 393 Pfam Protein phosphatase 2C 94 346 IPR001932 -
Cme01g02385 393 ProSiteProfiles PPM-type phosphatase domain profile. 84 354 IPR001932 -
Cme01g02385 393 Gene3D - 63 358 IPR036457 -
Cme01g02385 393 ProSitePatterns PPM-type phosphatase domain signature. 123 131 IPR000222 GO:0043169
Cme01g02385 393 SMART PP2C_SIG_2 99 354 IPR001932 -
Cme01g02385 393 SMART PP2C_4 74 352 IPR001932 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme01g02385 Cme-Chr1:32216538 Cme11g02106 Cme-Chr11:28685305 5.04E-133 dispersed
Cme01g02385 Cme-Chr1:32216538 Cme01g02548 Cme-Chr1:33435260 7.89E-38 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme01g02385 K14803 - csv:101216626 742.651