Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme01g02407 ATGGGATGCTTTGGTTGCTGCGAAGAAGATGCTATCCAGAAGGCTGCTGATAATAGCAACACGTACCAAGTAAAAACTTCAGCAGGAACTGATGAAAGCTATCACAAACGGCAAACGGCACCTAAAAGTCCTCCAATAATGAAAATCCTGCCCATTGAAGTCCCTGCCATATCATTTGAGGAACTAAAGGAGGTTACCAAAAATTTTGATGCCGACTGTTTGATTGGAGAGGGTTCCTACGGTAGAGTATACTATGGGGTATTTAAAAGTGGGCAGACTGTGGGAATCAAAAAGTTGGATGCTAGCAAACAATCAGATGATGAATTCTTGTCCCAGGTCTCCATGGTTTCAAGACTAAAGCACGAAAATTTTCTGAACTTGATTGGGTACTGTGTTGGTGGCAATTCTCGAATTCTTGCATATGAGTATGCTTCAAACGGATCTCTTCATGACATTTTACACGGGAGGAAAGGAGTCAAAGGATCTCAGCCCGGCCCTGTTCTTTCCTGGGCACAAAGAGTAAAAATTGCTGTAGGTGCTGCAAAGGGGTTGGAGTATTTGCACGAAAAGGTCGATCCTCATATCGTCCATCGTGACATAAAATCCAGCAACGTACTAATATTTGATGATGATTTGGCAAAAATTGCTGACTTTGATTTGTCAAACCAAGCCCCTGATATGGCTGCACGGCTTCACTCCACCCGTGTTCTTGGAACCTTTGGCTATCATGCTCCGGAATACGCAATGACTGGACAATTGAATGCCAAGAGTGATGTGTACAGCTTTGGTGTTGTCCTGCTTGAACTTTTGACAGGAAGAAAGCCAGTTGATCATACATTACCTCGAGGACAGCAAAGCCTCGTGACATGGGCCACGCCCAAACTTTGCGAAGATAAAGTTAAGCAGTGTGTTGATGCAAAACTAGGAAATGAGTACCCTCCTAAGTCAGTTGCTAAGTTTGCAGCAGTGGCTGCATTATGCGTTCAATACGAAGCAGATTTCAGACCAAACATGAGTATTGTAGTCAAAGCTCTTCAACCTCTCTTAAATGCCCGTCCTGGCCCTTGA 1068 43.91 MGCFGCCEEDAIQKAADNSNTYQVKTSAGTDESYHKRQTAPKSPPIMKILPIEVPAISFEELKEVTKNFDADCLIGEGSYGRVYYGVFKSGQTVGIKKLDASKQSDDEFLSQVSMVSRLKHENFLNLIGYCVGGNSRILAYEYASNGSLHDILHGRKGVKGSQPGPVLSWAQRVKIAVGAAKGLEYLHEKVDPHIVHRDIKSSNVLIFDDDLAKIADFDLSNQAPDMAARLHSTRVLGTFGYHAPEYAMTGQLNAKSDVYSFGVVLLELLTGRKPVDHTLPRGQQSLVTWATPKLCEDKVKQCVDAKLGNEYPPKSVAKFAAVAALCVQYEADFRPNMSIVVKALQPLLNARPGP 355
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 32378686 32384176 + MELO3C023605.2.1 Cme01g02407 319383
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme01g02407 355 PANTHER PTO-INTERACTING PROTEIN 1-LIKE 1 353 - -
Cme01g02407 355 Pfam Protein tyrosine and serine/threonine kinase 74 345 IPR001245 GO:0004672|GO:0006468
Cme01g02407 355 CDD STKc_IRAK 75 348 - -
Cme01g02407 355 Gene3D Phosphorylase Kinase; domain 1 29 143 - -
Cme01g02407 355 Gene3D Transferase(Phosphotransferase) domain 1 144 352 - -
Cme01g02407 355 SUPERFAMILY Protein kinase-like (PK-like) 43 345 IPR011009 -
Cme01g02407 355 ProSitePatterns Serine/Threonine protein kinases active-site signature. 195 207 IPR008271 GO:0004672|GO:0006468
Cme01g02407 355 ProSiteProfiles Protein kinase domain profile. 69 349 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme01g02407 355 SMART serkin_6 69 349 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme01g02407 355 PIRSF ILK 10 352 - -
Cme01g02407 355 PANTHER PTO-INTERACTING PROTEIN 1-LIKE 1 353 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme01g02407 Cme-Chr1:32378686 Cme07g02090 Cme-Chr7:25650633 1.21E-91 dispersed
Cme08g00325 Cme-Chr8:2068138 Cme01g02407 Cme-Chr1:32378686 2.52E-69 dispersed
Cme03g00687 Cme-Chr3:11890055 Cme01g02407 Cme-Chr1:32378686 2.43E-178 transposed
Cme04g02259 Cme-Chr4:29642583 Cme01g02407 Cme-Chr1:32378686 3.08E-164 transposed
Cme07g01866 Cme-Chr7:24085083 Cme01g02407 Cme-Chr1:32378686 1.02E-161 transposed
Cme01g02407 Cme-Chr1:32378686 Cme04g01570 Cme-Chr4:23034458 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
64632 PF07714 PK_Tyr_Ser-Thr 3.80E-45 CL0016 Cme PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme01g02407 K13436 - csv:101215263 708.753