Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme01g02420 ATGCTTTTTGCTGCCTTATATTGCATGACTATTCAACTTATTCTCCACTTTTTCACAACAAAAACTTCCTCCATGTTTTCCCATGCATTTCCATTCCTTCATCACAAACCCATCATGGATTCTGGAAACCTCTCCTCCTCCTCTTCCTCCTCCTTGCCCCCTTCGATTTCCGTCCGACACTTTGGGCTCCAATCGCTCCTCGATGTCCAAATCTTAGAGATCTCTTTTGCCCTTTTTGTGTTCTTGGTTATTCATGTTGTTAGACAGAAGAGACGACATGGCTTGCCTATATGGCCAATCGTCGGAATGTTACCAGCTTTGATTACGGCAACACGTGGGAATCTCTACGAGTGGATTACCGACCTCTTGTGTCGTCACAAGGGCACATTTCAATTTCGAGGTCCGTGGCTTACTAGTCTCAATTGCGTCGTCACTGCTGATCCTCGAAACTTAGAACACCTTCTCAAGACAAAATTTTCTTCCTACCCAAAAGGGTCGTTCTTCCGCGACACCGTGAGAGACTTACTTGGTGATGGAATATTCGGGGCTGACGACGAGACATGGCAACGACAGAGGAAGGTGGCGAGCATTGAGTTTCACTCGGCAAGGTTTCGACAAATGACGGTGGAGTCGTTGGTGGAGCTTGCGCACTCGAGGCTGGAAGCAGTGTTGGAGGATTTTGCGGGGAAGTCGACAACGGTGGACTTGCAAGATGTTCTTTTGAGGTTGACGTTTGACAATGTGTGTATGATTGCCTTTGGGGTGGATCCCGGTTGCTTGCGCGGAGGCTTGCCGGAGATTCCATTTGCTAAGGCCTTTGAGGATGCAACTGAAGTCACTGTTATGCGCTTCATCACACCTACATTCATATGGAAAGCCATGAGGTACCTGAACATAGGAATTGAGAAGAAGTTGAAGCAATCGATCAAAGCCGTCGACGAATTTGCGGAGAACGTGATTCAAACACGGAAGAGAGAACTCTCTACGCCGGCGGAATCTCAAGCCGACAACAAAAGATCCGACCTATTAACTGTATTCATGAAGCTGAGAGACGAGCAAGGGCGCCCATTCTCTGATAAGTTTCTCAGAGATATTTGCGTCAATTTCATACTCGCCGGAAGAGACACGTCTTCCGTAGCATTGAGTTGGTTCTTCTGGTTGCTCGATCAAAATCCCGATGTAGAAGATAAAATTCTAGCAGAAATTTGCAGAATTGTCGGCGAACGAGAAGAGGCCAAAACCAGAGAGCTTCGATTCGATTCATTAGTGTTCAAACCAGAAGAGATAAAAAAAATGGAGTATTTGCACGCCGCCATTTCCGAAGCCCTAAGATTGTATCCATCAGTTCCATTCGATCACAAAGAGGTTGTGGAGGACGATACATTCCCAGACGGAACGATTCTGAAGAAAGGAATGAAAATCATCTACGCAATATACGCAATGGGAAGAATGGAAGCGATTTGGGGGAAAGATTGTCGCGAATTCAAACCTGAGAGATGGATGAGAGACGGTCGATTCATGAGCGAATCGGTGTATCGATTCACCGCCTTCAATGGGGGCCCTCGGCTGTGTCTTGGAAAAGATTTTGCGTATTATCAAATGAAATACGTGGCGGCTTCTATCATCAGCCGGTACCGGGTGGCGGTGGTGGCGGGGCATCCGGTGGAGCCGAAGCTTTCCCTAACTTTCTACATGAAGAAGGGGTTGAAGGTCAATTTGATTAAACGAGAAGAGGGGCAAATTCGGAAATACATGAAGTTAAATTGA 1767 46.69 MLFAALYCMTIQLILHFFTTKTSSMFSHAFPFLHHKPIMDSGNLSSSSSSSLPPSISVRHFGLQSLLDVQILEISFALFVFLVIHVVRQKRRHGLPIWPIVGMLPALITATRGNLYEWITDLLCRHKGTFQFRGPWLTSLNCVVTADPRNLEHLLKTKFSSYPKGSFFRDTVRDLLGDGIFGADDETWQRQRKVASIEFHSARFRQMTVESLVELAHSRLEAVLEDFAGKSTTVDLQDVLLRLTFDNVCMIAFGVDPGCLRGGLPEIPFAKAFEDATEVTVMRFITPTFIWKAMRYLNIGIEKKLKQSIKAVDEFAENVIQTRKRELSTPAESQADNKRSDLLTVFMKLRDEQGRPFSDKFLRDICVNFILAGRDTSSVALSWFFWLLDQNPDVEDKILAEICRIVGEREEAKTRELRFDSLVFKPEEIKKMEYLHAAISEALRLYPSVPFDHKEVVEDDTFPDGTILKKGMKIIYAIYAMGRMEAIWGKDCREFKPERWMRDGRFMSESVYRFTAFNGGPRLCLGKDFAYYQMKYVAASIISRYRVAVVAGHPVEPKLSLTFYMKKGLKVNLIKREEGQIRKYMKLN 588
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 32482869 32485379 - MELO3C023592.2.1 Cme01g02420 319396
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme01g02420 588 Coils Coil 574 588 - -
Cme01g02420 588 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 517 526 IPR017972 GO:0005506|GO:0016705
Cme01g02420 588 SUPERFAMILY Cytochrome P450 94 576 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cme01g02420 588 PRINTS P450 superfamily signature 372 389 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cme01g02420 588 PRINTS P450 superfamily signature 524 535 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cme01g02420 588 PRINTS P450 superfamily signature 515 524 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cme01g02420 588 PRINTS P450 superfamily signature 437 448 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cme01g02420 588 PANTHER CYTOCHROME P450 86B1-LIKE 59 577 - -
Cme01g02420 588 PRINTS E-class P450 group I signature 361 378 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cme01g02420 588 PRINTS E-class P450 group I signature 514 524 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cme01g02420 588 PRINTS E-class P450 group I signature 381 407 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cme01g02420 588 PRINTS E-class P450 group I signature 436 454 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cme01g02420 588 PRINTS E-class P450 group I signature 524 547 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cme01g02420 588 PANTHER CYTOCHROME P450 59 577 - -
Cme01g02420 588 Gene3D Cytochrome P450 90 586 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cme01g02420 588 Pfam Cytochrome P450 95 561 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme01g02420 Cme-Chr1:32482869 Cme09g01772 Cme-Chr9:22177392 3.00E-156 dispersed
Cme06g00241 Cme-Chr6:1447405 Cme01g02420 Cme-Chr1:32482869 5.05E-112 dispersed
Cme08g00490 Cme-Chr8:3027202 Cme01g02420 Cme-Chr1:32482869 2.49E-116 dispersed
Cme02g02059 Cme-Chr2:26588824 Cme01g02420 Cme-Chr1:32482869 5.44E-110 transposed
Cme04g02412 Cme-Chr4:30766416 Cme01g02420 Cme-Chr1:32482869 7.83E-107 transposed
Cme12g00613 Cme-Chr12:10954273 Cme01g02420 Cme-Chr1:32482869 4.58E-111 transposed
Cme01g02420 Cme-Chr1:32482869 Cme04g01598 Cme-Chr4:23256961 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme01g02420 K15402 - csv:101212202 1115.91