Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme01g02432 ATGGCGGAATCCGAGCATCGTGCTAAGCGCCCTAGAATTACGAGGGGGGAAGATGATTATATGCCTGGAAGTATAATTGAGATTGAGCTTCATAACTTTATGACCTTTAACCACCTGAAGTGTAAACCAGGATCGCGTCTAAACCTTGTAATTGGGCCTAATGGATCTGGTAAAAGCTCTATTGTATGTGCTATTGCCCTTGGCCTTGGTGGTGAGCCTCAGCTCCTTGGAAGGGCAACCAGTGTTGGAGCATACGTGAAGCGTGGGGAGGAGTCTGGTTATGTTAGAATAACCTTGAGAGGGAATACTAAAGAAGAGAAGATTACAATTACACGTAAAATGGACACGCACAACAAATCTGAGTGGCTGTTCAATGGAAAAGTTGTGCCGAAAAAAGATGTAGCTGGAGTCATTCAAAGGTTTAATATTCAAGTTAATAATTTAACTCAATTTTTACCTCAGGACAGGGTTTGTGAGTTTGCCAAATTAACTCCTGTGCAACTTTTAGAAGAGACTGAAAAGGCAGTTGGTGACCCTCAACTTCCTATCCTACATCGTGCACTTGTTGATAAAAGCCATGGCATAAAAAGTATTGAAAGAGCTGTTGAGAAAAATGGTGAAACCCTAGATCAGTTGAAGGCATTAAATGTTGAGCAAGAGAAAGATGTTGAGCATGTTCGTCAAAGAGATGAACTTTTAAAAAAGGTTGAGTCCATGAAAAAGAAACTGCCATGGTTAAAGTATGACATGAAAAAGGCTGAATACTTGGAAGTTAAGGAAAAAGAAAAGGAGGCCAAAAAGAAGTTAGATGAAGCTGCTAACACTTTGAATGATCTAAAGGAGCCAATTGAGAAACAAAAAATGGAGAAGGCAAAGTTGGATGCTAAAACTAAAAAGTATAGCACTCGTATTAATGATAATCACAAGAAAAGGATGGAACTTCAGGAAACTGAAAACCGTTTGGGGGTGCAAGTGCAAGGAAAATTGAAAGAAATGGAAGACTTGAGGAAACAAGAAGAATCTCGTCAACAGAGAATCTTACGAGCTAAAGAGGAACTTGAAGCTGCTGAGTTTGAACTTCAGAGTTTGCCTGCTTATGAACATCCCAAGGACGAGATCGAACGGTTGCGTGCTCAAATTTTGGAATTGGAAGCTTCAGCTAGTCAGAAGAGACTTATGAAGTCAGAGATTGAGAAAAACATTTCCCAAAAAAGAAATAATTTGAGGCAATGCTCGGATAGGTTAAAGGATATGGAGAATACTAATACAAAACTACTACAGGCATTGAAAAATTCTGGAACAGAGAAGATCTTTGAAGCTTATCACTGGCTTCAAGAACATCGCCATGAGTTCAAGAAGGAGGTGTATGGTCCAGTGTTGCTAGAGGTTAATGTGTCTAATCGGACTCATGCTGACTACTTAGAAGGTCATATTCCATCCTATGTCTGGAAGTCCTTCATCACCCAAGATTCCGATGATCGCGACATTATGGTAAAAAACTTGGGCTCTTTTGGCGTTCCTATCTTAAACTATGTGGGAGGTGAAAGGCGCACAAATCAGCATTTTGAGTTGTCTGAGGAGGTTCGTGCATTTGGCATATATTCTCGGCTAGACCAAATTTTTGAAGCTCCTGCAGCTGTAAAGGAGGTTTTAACCATGCAGTTTGGTTTAGAACATTCATATATTGGTTCAAAGGTAACTGATCAAAAGGCAGACGAGGTCTCAAAATTGGGAATTTTAGATTTTTGGACTCCAGATAATCATTATCGATGGTCTCGCTCTAGATACGGTGGTCATATGTCCGGAAGTGTGGAACCAGTTGATCGCTCACGTCTTCTTTTGTGCAACTTGGATGCGGGAGAAATTGATGGGCTTCGCTCTAGGAAAAATGAGCTAGAAGAATCTGTTTCTGCCTTAGAAGAAAATTGTAAATCATGTCAGAATGAGCTAAGATTGATAGAAGACGAAGAAGCTAAACTTCGCAAACATCGGGAAAACATTTTAAATACTGTGCAACATGAGAAGAGAAAACGACGTGAGATGGAAAATCGCATTGATCAAAGGAAAAAGAAATTAGAATCTATGGAGCGGGAAGAAGACTTGGATACTGTTGTGGCCAAGCTTGTCGACCAAGTTGCAAATTTTAACATTCAGAGGTTCCGTTGTGCAATTGAAATTAAGCATTTGCTTCTTGAAGCCGTTTCCTATAGACAGAGCTTGACTAAGAACCATATGTCTTCCATTGAAATTGAAGCAAAGATCAGAGAATTGGAGGTTAATCTAAAGCAGCATGAAAAGGTTGCTCTGCAAGCGTCAGTGCAGTTTGAGTACTGCAAGAAGGAAGTTGAGGACTATCTACAGCAACTTTCAGCTGCCAAGAAGTATGCAGAATCTATTGCTGCAATCACACCTGAACTTGAGAAGGAATTTCTTGAGATGCCTACTACAATTGAGGAATTGGAGGCTGCTATTCAAGATAACACCTCTCAAGCTAATTCCATTCTATTCTTAAACCATAACGTGCTTGAGGAATATGAACATCGTCAGCGTCAGATAAACATTATTGCACGAAAACTAGAGGCTGATAAACATGAACTAAGGAAGTGTATGGCTGAAGTTGATGACCTGAAGGGAAATTGGCTCCCAACATTAAGAAAGCTTGTTTCTCAGATAAATGAAAGTTTTAGTCGCAATTTTCAAGAGATGGCTGTTGCTGGAGAAGTGTTACTGGATGAGCATGATATGGACTTTGATCAATTTGGAATACTTATTAAAGTGAAGTTCAGACAATCAGGTCAGCTTCAGGTTCTCAGTGCACATCATCAATCTGGAGGGGAACGATCTGTGTCAACAATTCTGTATCTCGTTTCCCTTCAAGACCTTACCAACTGCCCATTTAGAGTAGTTGACGAGATAAACCAAGGAATGGATCCCATAAATGAACGGAAGATGTTCCAGCAATTAGTGAGAGCTGCCAGTCAAACCAATACACCACAGTGTTTCCTATTGACTCCAAAGTTACTTCCAGAACTGGAATATAGTGAGGCCTGTACTATACTGAATATAATGAATGGTCCTTGGATCGAGCAGCCCTCAAGAGCATGGAGCAATGGAGATAGCTGGGGAACGTTGATGAACTACGTAGGGAAAAGCCGATGTTGA 3162 40.39 MAESEHRAKRPRITRGEDDYMPGSIIEIELHNFMTFNHLKCKPGSRLNLVIGPNGSGKSSIVCAIALGLGGEPQLLGRATSVGAYVKRGEESGYVRITLRGNTKEEKITITRKMDTHNKSEWLFNGKVVPKKDVAGVIQRFNIQVNNLTQFLPQDRVCEFAKLTPVQLLEETEKAVGDPQLPILHRALVDKSHGIKSIERAVEKNGETLDQLKALNVEQEKDVEHVRQRDELLKKVESMKKKLPWLKYDMKKAEYLEVKEKEKEAKKKLDEAANTLNDLKEPIEKQKMEKAKLDAKTKKYSTRINDNHKKRMELQETENRLGVQVQGKLKEMEDLRKQEESRQQRILRAKEELEAAEFELQSLPAYEHPKDEIERLRAQILELEASASQKRLMKSEIEKNISQKRNNLRQCSDRLKDMENTNTKLLQALKNSGTEKIFEAYHWLQEHRHEFKKEVYGPVLLEVNVSNRTHADYLEGHIPSYVWKSFITQDSDDRDIMVKNLGSFGVPILNYVGGERRTNQHFELSEEVRAFGIYSRLDQIFEAPAAVKEVLTMQFGLEHSYIGSKVTDQKADEVSKLGILDFWTPDNHYRWSRSRYGGHMSGSVEPVDRSRLLLCNLDAGEIDGLRSRKNELEESVSALEENCKSCQNELRLIEDEEAKLRKHRENILNTVQHEKRKRREMENRIDQRKKKLESMEREEDLDTVVAKLVDQVANFNIQRFRCAIEIKHLLLEAVSYRQSLTKNHMSSIEIEAKIRELEVNLKQHEKVALQASVQFEYCKKEVEDYLQQLSAAKKYAESIAAITPELEKEFLEMPTTIEELEAAIQDNTSQANSILFLNHNVLEEYEHRQRQINIIARKLEADKHELRKCMAEVDDLKGNWLPTLRKLVSQINESFSRNFQEMAVAGEVLLDEHDMDFDQFGILIKVKFRQSGQLQVLSAHHQSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQTNTPQCFLLTPKLLPELEYSEACTILNIMNGPWIEQPSRAWSNGDSWGTLMNYVGKSRC 1053
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 32546528 32562188 - MELO3C023581.2.1 Cme01g02432 319408

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme01g02432 1053 CDD ABC_SMC5_euk 926 1028 - -
Cme01g02432 1053 CDD ABC_SMC5_euk 23 180 - -
Cme01g02432 1053 Gene3D - 24 221 IPR027417 -
Cme01g02432 1053 Coils Coil 329 356 - -
Cme01g02432 1053 Coils Coil 842 879 - -
Cme01g02432 1053 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 750 1005 IPR027417 -
Cme01g02432 1053 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 25 996 IPR027417 -
Cme01g02432 1053 PANTHER STRUCTURAL MAINTENANCE OF CHROMOSOMES PROTEIN 5 19 1049 IPR027131 GO:0000724|GO:0005524|GO:0006281|GO:0016887|GO:0030915
Cme01g02432 1053 Coils Coil 747 774 - -
Cme01g02432 1053 Gene3D - 847 1022 IPR027417 -
Cme01g02432 1053 Coils Coil 198 229 - -
Cme01g02432 1053 Coils Coil 622 698 - -
Cme01g02432 1053 Pfam RecF/RecN/SMC N terminal domain 25 994 IPR003395 -
Cme01g02432 1053 Coils Coil 373 428 - -
Cme01g02432 1053 Coils Coil 252 279 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme01g02432 K22803 SMC5; structural maintenance of chromosomes protein 5 - csv:101210248 2010.73
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme01g02432 Cme-Chr1:32546528 Cme06g00888 Cme-Chr6:6215120 8.75E-10 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi13g1074 . . . . . . . . . Cmo17g00945 . . . . Sed07g0592 . Cpe12g00841 Bhi09g00709 Tan06g0629 Cmetu01g0859 . Hepe03g1771 . . . . . . . . . . Cone20ag1052 . . Lsi02g02546 . . . . . . . . . . . . . . . Cma17g00970 . Car17g00928 . . . . . . . . . Cla09g00408 Cam09g0435 Cec09g0438 Cco09g0425 Clacu09g0440 . Cre09g0421 . . Chy01g01830 Cme01g02432
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cme01g02432 . 4 1044 Structural Maintenance of Chromosomes family AT5G15920 69.1 0.0e+00 1389.0
Cme07g01829 . 1 943 Structural Maintenance of Chromosomes family AT5G07660 57.9 2.6e-286 981.9
Cme07g01829 . 1 943 Structural Maintenance of Chromosomes family AT5G61460 61.0 1.0e-306 1049.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008822 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 4 1 32