Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme01g02457 ATGCACTTTTATCTTGAAAAATACTATACTAAAATCGAACTGTATCACCTTAGAAATGATGAACAAATGCAGGCTGGAAAGATAACTACATCTACGAGTATGGTGATGGTAATTGTAATCTTCTTCACAGTCGTGCATGCCCCAAAAGTTGTAGAATGTATAATCCAAAGGGCAAGGAAACGCACACCTACACATCGAATGGCTCTCCAATTGCTTGATCCGTCAAGCGAGCTTAAGATCTTGTTATGTATACATGGACCTCAGAACACTCCAGCAGCCATTAACATCATGGAGATTTCTAGGGGGACAGCTAACCCTGGGGTGGTTGTATATGTTACAGACATGATTGAACTTACGGATGAAATAGCATCCACATTAGTTCAGGGTGAAGGAGTTGACAGCGTGACTGTAACCCACACAGGAGTGACACAAATGAGAGAACAAGTTACTTCTGCAGTTCAAAGCTATGTAGATGAAAATGGAGAAGGGATTACCCTTAGAAGAATGTTGGCTCTCTCAACATTCAATTCTATGGCTCAGGACATTTGCATTTTGGCAGAGGAATTGATGGGAGCTCTTATCATACTGCCATTCCACAAGAGCCAGCGTGGAGACGGATCATTGAGTGAGGGCCAAGCAGCTTTCCGCTATGTAAACCGCAAGGTTCTCAGGCATGCCCCCTGCTCTGTGGGAATCCTAGTGGATCGAGGTCTTGGATCAGTAGAGAAAATTTCAAGGTCTTATGTATCTCAAAATGTGGCAGTCATCTTCATTGGCGGTAAAGATGATCGAGAAGCATTAGCCTACGCAGGTCGAGTAGCAAGGCATCCCGGAGTTAAACTCTCAGTGATTAGATTCTTAGTGGATGCTGATGCAGAAAATGCTGCAAGAAGAGCGGGAACTTACAGGATAAGTGTGGCTGAGCAGGAAGACGAAATGAGACAAGACGATGAATGCTTTGCCTATTTTTATGAACGACATGTGGCTGGTGGGCATGTTGCTTATGTTGAAAAACATCTGGCCAGTTCCTCCGAGACGTATTCTACTTTGAAATCACTGGAAGGGCAATATGCCCTCATAATTGTAGGTCGAGGTGGGAAGGTTAACTCGGTGTTAACTTTTGGGATGAATGACTGGCAACAATGTCCAGAACTGGGTCCTATAGGGGATATTCTCTCCGGGTCTGAATTCTCGGTTAGGACATCAGTTTTGATCATCCATCAACACAATCTAAAAGGAGAACTAGATGGGCTTGATGATGACTTTTCAATAATGTAG 1278 43.58 MHFYLEKYYTKIELYHLRNDEQMQAGKITTSTSMVMVIVIFFTVVHAPKVVECIIQRARKRTPTHRMALQLLDPSSELKILLCIHGPQNTPAAINIMEISRGTANPGVVVYVTDMIELTDEIASTLVQGEGVDSVTVTHTGVTQMREQVTSAVQSYVDENGEGITLRRMLALSTFNSMAQDICILAEELMGALIILPFHKSQRGDGSLSEGQAAFRYVNRKVLRHAPCSVGILVDRGLGSVEKISRSYVSQNVAVIFIGGKDDREALAYAGRVARHPGVKLSVIRFLVDADAENAARRAGTYRISVAEQEDEMRQDDECFAYFYERHVAGGHVAYVEKHLASSSETYSTLKSLEGQYALIIVGRGGKVNSVLTFGMNDWQQCPELGPIGDILSGSEFSVRTSVLIIHQHNLKGELDGLDDDFSIM 425
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 32775878 32779796 + MELO3C023563.2.1 Cme01g02457 319433

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme01g02457 425 Gene3D - 79 378 - -
Cme01g02457 425 PANTHER CATION/H + ANTIPORTER 23 422 - -
Cme01g02457 425 PANTHER CATION/H(+) ANTIPORTER 28 23 422 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme01g02457 - - - csv:101211645 764.607
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme01g02457 Cme-Chr1:32775878 Cme11g00056 Cme-Chr11:476797 2.62E-78 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi13g1119 Blo06g00594 . . . . Bpe10g00541 . . . . . . . . Sed09g1353 . . Bhi09g00656 Tan06g0598 Cmetu01g0797 . . . . . . . . . . . . Cone20ag1063 . . Lsi02g02561 . . . . . . . . . . . . . . Cma08g00518 . Car08g00430 . . . . . . . . . . Cla09g00367 Cam09g0397 Cec09g0401 Cco09g0384 Clacu09g0400 . Cre09g0382 . . Chy01g01852 Cme01g02457
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cme11g00056 . 11 815 Antiporter Super Family AT2G13620 72.2 0.0e+00 1158.3
Cme07g01598 . 11 785 Antiporter Super Family AT2G13620 50.8 2.7e-209 725.7
Cme08g02387 . 74 846 Antiporter Super Family AT3G53720 69.1 4.4e-291 997.3
Cme07g01599 . 83 779 Antiporter Super Family AT3G53720 50.7 1.4e-183 640.2
Cme07g01599 . 1 779 Antiporter Super Family AT5G41610 69.9 2.6e-310 1061.2
Cme07g01598 . 1 785 Antiporter Super Family AT5G41610 66.8 6.7e-298 1020.0
Cme07g01597 . 7 791 Antiporter Super Family AT5G41610 63.5 8.2e-280 959.9
Cme08g02387 . 6 821 Antiporter Super Family AT5G41610 50.8 2.4e-207 719.2
Cme07g01598 . 11 783 Antiporter Super Family AT4G23700 66.3 3.7e-288 987.6
Cme07g01599 . 9 796 Antiporter Super Family AT4G23700 62.9 4.1e-279 957.6
Cme07g01597 . 8 791 Antiporter Super Family AT4G23700 62.0 2.6e-273 938.3
Cme07g01599 . 5 779 Antiporter Super Family AT3G17630 63.7 3.7e-272 934.5
Cme07g01598 . 4 783 Antiporter Super Family AT3G17630 62.7 6.2e-272 933.7
Cme07g01597 . 7 791 Antiporter Super Family AT3G17630 59.5 9.1e-255 876.7
Cme08g02387 . 6 815 Antiporter Super Family AT3G17630 52.6 5.4e-207 718.0
Cme07g01598 . 4 785 Antiporter Super Family AT1G64170 57.8 8.1e-243 837.0
Cme07g01599 . 1 784 Antiporter Super Family AT1G64170 55.8 1.3e-232 803.1
Cme07g01597 . 3 794 Antiporter Super Family AT1G64170 54.2 9.9e-225 776.9
Cme11g00056 . 11 815 Antiporter Super Family AT2G13620 72.2 0.0e+00 1158.3
Cme07g01598 . 11 785 Antiporter Super Family AT2G13620 50.8 2.7e-209 725.7
Cme07g01598 . 4 785 Antiporter Super Family AT1G64170 57.8 8.1e-243 837.0
Cme07g01599 . 1 784 Antiporter Super Family AT1G64170 55.8 1.3e-232 803.1
Cme07g01597 . 3 794 Antiporter Super Family AT1G64170 54.2 9.9e-225 776.9
Cme07g01598 . 11 783 Antiporter Super Family AT4G23700 66.3 3.7e-288 987.6
Cme07g01599 . 9 796 Antiporter Super Family AT4G23700 62.9 4.1e-279 957.6
Cme07g01597 . 8 791 Antiporter Super Family AT4G23700 62.0 2.6e-273 938.3
Cme07g01599 . 1 779 Antiporter Super Family AT5G41610 69.9 2.6e-310 1061.2
Cme07g01598 . 1 785 Antiporter Super Family AT5G41610 66.8 6.7e-298 1020.0
Cme07g01597 . 7 791 Antiporter Super Family AT5G41610 63.5 8.2e-280 959.9
Cme08g02387 . 6 821 Antiporter Super Family AT5G41610 50.8 2.4e-207 719.2
Cme07g01599 . 5 779 Antiporter Super Family AT3G17630 63.7 3.7e-272 934.5
Cme07g01598 . 4 783 Antiporter Super Family AT3G17630 62.7 6.2e-272 933.7
Cme07g01597 . 7 791 Antiporter Super Family AT3G17630 59.5 9.1e-255 876.7
Cme08g02387 . 6 815 Antiporter Super Family AT3G17630 52.6 5.4e-207 718.0
Cme08g02387 . 74 846 Antiporter Super Family AT3G53720 69.1 4.4e-291 997.3
Cme07g01599 . 83 779 Antiporter Super Family AT3G53720 50.7 1.4e-183 640.2
Cme01g02457 . 24 425 Antiporter Super Family AT3G52080 58.0 3.3e-132 469.5
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008009 0 2 1 0 1 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 2 1 1 34