Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme01g02470 ATGGAACATGCAGAATCTGCGGCAAAGGTTATAAAGAACATGGGCCCCAATGCCTGTCAAATATGTGGAGACCATGTTGGGAAGACCGTCGAGGGTGAGCCATTTGTTGCTTGTGATGTTTGCACATTTCCTGTGTGCAGACCATGCTACGAGTACGAGAGAAAAGATGGGAATCAGTCTTGTCCTCAATGCAAAAGCAGATACAAGAGGCACAAAGGAAGTCCTGTTGTTCTTGGTGATGACGAGGCTGCTGAGCTTGATGATGATGATGATGATGCAATTGATTTAAATTACATTTCTGAAAGTCAAAAACAGAAGCAGAAGATTGCAGAACGAATGATGAGCTGGCAGATGCCATATGGACATGCACGAGATCTTCCCCCACCGAACTACGACAAAGAAGTTTCTTTAAATCACATACCCTTGCTCACCAATGGGCAGGAGGTTTCTGGAGAACTGTCAGCTGCATCACCCGAGCATCATTCGATGGCATCTCCTGGACATCCTCGTGGGAAGCCGATATATTCTCTTCCTTATGCAGCTGACATTAACCAATCACCTAATGTGCAAGGTGTGGACCCTACAAAAGAGTATAGTTCATCGGGGCTAGGTAATGTAGCTTGGAAAGAGAGAGTTGATGGCTGGAAGATGAAACAGGAGAAGAATGCTGGGCCAATGAGCGTAGCCCATGCTGCATCTGAAAGGGGAGGTGGAGATATTGATGCCTGCACAGATGTGCTTGTTGATGACTCCTTACTAAATGATGAAGCACGCCAGCCTCTTTCACGAAAGGTTTCTATTCCATCATCTAGGATAAACCCTTACAGGATGGTGATTGTTCTGCGGCTTGTAATTATTTGTTTTTTCTTGCACTACCGAATCACAAATCCAGTACGCAATGCATATGCTTTATGGCTGGTATCTGTTATATGTGAGATTTGGTTTGCAATATCCTGGATATTAGATCAGTTCCCGAAGTGGCTTCCTGTAAACCGTGAGACATATTTAGATCGGCTTGCATTAAGATATGATAGGGAAGGAGAACCATCACAGCTTGCTGCTGTTGACATTTTTGTGAGTACTGTTGACCCACTGAAGGAGCCTCCACTTGTCACAGCTAACACCGTACTGTCTATTCTCGCTGTTGACTACCCGGTTGACAAGGTCTCGTGCTATGTTTCTGATGATGGAGCTGCCATGTTGACGTTTGAAGCATTATCTGAAACATCAGAGTTTGCAAGGTCATGGGTGCCTTTCTGCAAGAAATACAGCATCGAACCTCGGGCTCCAGAGTGGTACTTTGCTCAGAAAATTGATTACTTGAAGGATAAAGTCGATCCATCATTTGTCAAAGATCGAAGAGCAATGAAGAGAGAATACGAGGAATTTAAGGTCCGCATCAACGGATTGGTGTCGAAGGCGCAGAAAGTTCCTGAAGAAGGATGGGTCATGCAAGATGGAACTCCATGGCCCGGAAATAATACTAGAGACCATCCAGGAATGATCCAGGTTTTCCTCGGGCAAAACGGTGGACTGGATACCGACGGTAACGAGCTACCTCGTTTAGTCTATGTATCTCGTGAAAAACGTCCAGGGTTCCAACATCATAAGAAAGCTGGTGCAATGAATGCTCTTGTTCGAGTATCTGCTGTTCTTACCAATGGCCCATTCTTGTTGAATCTTGACTGTGATCACTACATAAACAACAGCAAGGCATTGAGGGAAGCAATGTGTTTTATGATGGATCCAAACCTTGGCAAATATGTCTGTTATGTTCAGTTTCCTCAAAGATTTGACGGTATTGATAAGAATGATCGATATGCCAACCGAAATACCGTGTTCTTTGATATAAATTTAAGAGGTTTAGATGGCCTACAAGGTCCAGTTTATGTGGGTACTGGATGCGTCTTCAACAGAACTGCACTGTATGGCTATGAACCTCCGCTCAAACCAAAGAATCGGAAAACAGGATTTCTGTCTTCGCTCTGTGGCGGATCTCGAAAGAAGAAAGCAAAATCAAGTAAAAAGAGCCCAGACAAGAAGAAATCAAGCAAGCATATTGATCCGACAGTGCCAATTTTCAATCTCGACGACATTGAAGAAGTGGTTGAAGGTGCTGGATTTGATGATGAGAAGTCCTTGCTAATGTCACAAATGACCCTGGAACAAAGGTTTGGCCAGTCTTCTGTTTTTGTTGCCTCAACCCTTATGGAAAACGGTGGTGTTCCTCAATCCGCAACGCCCGAGTCTCTTCTGAAGGAGGCTATTCATGTTATTAGCTGTGGATATGAAGATAAAACGGACTGGGGATCCGAGATTGGATGGATTTATGGCTCTGTCACTGAAGATATTCTTACAGGATTCAAGATGCATGCTCGCGGTTGGCGGTCGATTTATTGTATGCCACAACGTCCTGCTTTTAAAGGGTCTGCACCTATTAATCTTTCAGATCGGTTAAACCAAGTGCTTCGATGGGCTCTCGGTTCGGTGGAGATTCTTCTAAGTAGGCATTGCCCTATGTGGTATGGCTATGGTGGAAGGCTCAAATGGCTTGAACGGTTTGCATATGTGAACACCACAATATATCCGATCACCTCGGTTCCTCTTCTCATGTATTGTACCTTACCAGCTGTGTGTCTACTGACGAACAAGTTCATTATTCCCCAGATAAGTAACATTGCAAGTATATGGTTTTTAGCCCTCTTCCTCTCCATTTTTGCAACGGGCATTCTCGAGATGAGATGGAGTGGGGTTGGGATCGACGAGTGGTGGAGAAACGAACAATTTTGGGTCATTGGAGGTGTTTCAGCTCACCTGTTTGCTGTTTTCCAAGGTCTGCTTAAGGTTCTTGCCGGTATTGACACCAACTTTACGGTGACATCCAAGGCATCTGATGAAGAGGGGGATTATGCTGAGCTTTACATGTTTAAATGGACGACACTTCTCATCCCACCAACTACACTCCTCATCGTAAACTTGGTCGGGGTCGTAGCAGGGATATCTTACGCAATCAACAGCGGATACCAATCATGGGGACCGTTGTTCGGCAAGCTATTTTTCGCTTTTTGGGTGATCATTCATCTCTATCCATTCTTGAAAGGTTTGATGGGTCGTCAAAACAGAACACCCACCATCGTCGTCGTGTGGTCGATCCTACTTGCTTCTATCTTCTCGTTGTTATGGGTGAGGATCGATCCGTTCACTACAACAGTCATAGGGCCCGACATCGAGGAGTGTGGAATCAACTGCTAG 3252 44.8 MEHAESAAKVIKNMGPNACQICGDHVGKTVEGEPFVACDVCTFPVCRPCYEYERKDGNQSCPQCKSRYKRHKGSPVVLGDDEAAELDDDDDDAIDLNYISESQKQKQKIAERMMSWQMPYGHARDLPPPNYDKEVSLNHIPLLTNGQEVSGELSAASPEHHSMASPGHPRGKPIYSLPYAADINQSPNVQGVDPTKEYSSSGLGNVAWKERVDGWKMKQEKNAGPMSVAHAASERGGGDIDACTDVLVDDSLLNDEARQPLSRKVSIPSSRINPYRMVIVLRLVIICFFLHYRITNPVRNAYALWLVSVICEIWFAISWILDQFPKWLPVNRETYLDRLALRYDREGEPSQLAAVDIFVSTVDPLKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGAAMLTFEALSETSEFARSWVPFCKKYSIEPRAPEWYFAQKIDYLKDKVDPSFVKDRRAMKREYEEFKVRINGLVSKAQKVPEEGWVMQDGTPWPGNNTRDHPGMIQVFLGQNGGLDTDGNELPRLVYVSREKRPGFQHHKKAGAMNALVRVSAVLTNGPFLLNLDCDHYINNSKALREAMCFMMDPNLGKYVCYVQFPQRFDGIDKNDRYANRNTVFFDINLRGLDGLQGPVYVGTGCVFNRTALYGYEPPLKPKNRKTGFLSSLCGGSRKKKAKSSKKSPDKKKSSKHIDPTVPIFNLDDIEEVVEGAGFDDEKSLLMSQMTLEQRFGQSSVFVASTLMENGGVPQSATPESLLKEAIHVISCGYEDKTDWGSEIGWIYGSVTEDILTGFKMHARGWRSIYCMPQRPAFKGSAPINLSDRLNQVLRWALGSVEILLSRHCPMWYGYGGRLKWLERFAYVNTTIYPITSVPLLMYCTLPAVCLLTNKFIIPQISNIASIWFLALFLSIFATGILEMRWSGVGIDEWWRNEQFWVIGGVSAHLFAVFQGLLKVLAGIDTNFTVTSKASDEEGDYAELYMFKWTTLLIPPTTLLIVNLVGVVAGISYAINSGYQSWGPLFGKLFFAFWVIIHLYPFLKGLMGRQNRTPTIVVVWSILLASIFSLLWVRIDPFTTTVIGPDIEECGINC 1083
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 32861258 32868256 + MELO3C023551.2.1 Cme01g02470 319446
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme01g02470 1083 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 2 93 IPR013083 -
Cme01g02470 1083 SUPERFAMILY Nucleotide-diphospho-sugar transferases 369 905 IPR029044 -
Cme01g02470 1083 Pfam Zinc-binding RING-finger 10 83 IPR027934 -
Cme01g02470 1083 SUPERFAMILY RING/U-box 5 89 - -
Cme01g02470 1083 MobiDBLite consensus disorder prediction 152 172 - -
Cme01g02470 1083 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 497 646 IPR029044 -
Cme01g02470 1083 Pfam Cellulose synthase 355 1074 IPR005150 GO:0016020|GO:0016760|GO:0030244
Cme01g02470 1083 MobiDBLite consensus disorder prediction 656 688 - -
Cme01g02470 1083 CDD mRING-HC-C4C4_CesA_plant 19 67 - -
Cme01g02470 1083 PANTHER CELLULOSE SYNTHASE 7 1083 - -
Cme01g02470 1083 PANTHER X-BOX TRANSCRIPTION FACTOR-RELATED 7 1083 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme01g02470 Cme-Chr1:32861258 Cme08g01623 Cme-Chr8:16699527 0 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme01g02470 K10999 - csv:101206590 2161.73