Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme01g02478 ATGACGGACCCAAATTACTCCAATTCCTTCAATTTCATCCATCTTCCTCCTTCAAATTTCCTTCTATCCCAATGCCGCCGTCCTCTTCCTCCTCCTTCGCCGCCGTCATCTCCGCCGCAAGCCCTCCCTCTCCTCAACACCCTCTCGCCGGAAACCGCCGATCATCCCTCCTCCTCCACCACCACTTGTAGTTACGATGACGAATCTGCTGTTCTTGCTCTTGACATCGGCCTCTCTTGCCCTAGCTCCGATCTAGACTCCTTCTCGCCAGACCCCGGCAACCGGAAAATAATCGACGGCGAGATTTCCGACCACCCTTTACCGATCTCCGGTAAGGGTCAGTACTGGATTCCAACCCCATCGCAGATCCTTATCGGTCCTACTCAGTTCTCTTGCCCTCTTTGTTCTAAAGCCTTCAATAGATACAATAATCTTCAGATGCATATGTGGGGACACGGTTCACAATACAGAAAAGGACCAGAATCACTCAAAGGCACACAACCAACTGCAATGTTAAGGCTACCGTGTTATTGTTGCGCAGCTGGTTGCAAACACAACATAGACAACCCTCGTTCACGCCCACTCAAAGATTTTCGGACCCTCCAAACCCATTACAAGCGCAAGCACGGGATCAAGCCTTTCACTTGTAGAAAATGCACCAAAGCCTTTGCTGTTAAGGGTGATTGGCGAACACACGAGAAGAATTGTGGCAAGATTTGGTATTGCTTTTGTGGCTCTGATTTTAAACATAAACGCTCCCTTAAAGACCACATCAAAGCCTTTGGTCGCGGCCATGGTGCCCTTGGCCTTGATTACTTTGACGACGATAATGAACCCTCTCCTGAACTCGATGAAGATCATCTCTTCGTTCGCCTTCGTTAA 882 49.21 MTDPNYSNSFNFIHLPPSNFLLSQCRRPLPPPSPPSSPPQALPLLNTLSPETADHPSSSTTTCSYDDESAVLALDIGLSCPSSDLDSFSPDPGNRKIIDGEISDHPLPISGKGQYWIPTPSQILIGPTQFSCPLCSKAFNRYNNLQMHMWGHGSQYRKGPESLKGTQPTAMLRLPCYCCAAGCKHNIDNPRSRPLKDFRTLQTHYKRKHGIKPFTCRKCTKAFAVKGDWRTHEKNCGKIWYCFCGSDFKHKRSLKDHIKAFGRGHGALGLDYFDDDNEPSPELDEDHLFVRLR 293
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 32921653 32924519 + MELO3C023544.2.1 Cme01g02478 319454
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme01g02478 293 Gene3D Classic Zinc Finger 192 265 - -
Cme01g02478 293 Gene3D Classic Zinc Finger 129 152 - -
Cme01g02478 293 ProSiteProfiles Zinc finger C2H2 type domain profile. 130 157 IPR013087 -
Cme01g02478 293 ProSitePatterns Zinc finger C2H2 type domain signature. 132 152 IPR013087 -
Cme01g02478 293 PANTHER ZINC FINGER PROTEIN WIP2-LIKE 2 286 - -
Cme01g02478 293 MobiDBLite consensus disorder prediction 42 63 - -
Cme01g02478 293 MobiDBLite consensus disorder prediction 27 41 - -
Cme01g02478 293 Pfam Zinc finger, C2H2 type 130 149 IPR013087 -
Cme01g02478 293 SUPERFAMILY beta-beta-alpha zinc fingers 197 234 IPR036236 -
Cme01g02478 293 SUPERFAMILY beta-beta-alpha zinc fingers 123 152 IPR036236 -
Cme01g02478 293 MobiDBLite consensus disorder prediction 25 63 - -
Cme01g02478 293 PANTHER ZINC FINGER PROTEIN WIP2 2 286 IPR043584 GO:0003700|GO:0010468
Cme01g02478 293 SMART c2h2final6 130 152 IPR013087 -
Cme01g02478 293 SMART c2h2final6 214 234 IPR013087 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme01g02478 Cme-Chr1:32921653 Cme08g01721 Cme-Chr8:19518035 3.63E-110 dispersed
Cme01g02478 Cme-Chr1:32921653 Cme04g02208 Cme-Chr4:29302073 3.05E-104 wgd
Cme01g02478 Cme-Chr1:32921653 Cme05g00148 Cme-Chr5:1007240 2.62E-82 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
40802 PF00096 zf-C2H2 0.0015 CL0361 Cme TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme01g02478 - - csv:101209911 580.096