Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme01g02508 TCTGCATCTGCCTTATATTTATTTGACTCATCGTATCAATATTTCTATACTCTCTTTTTCCTTTTTTCCCGCAGTCCTCTCCACTCCCAAACTCTCCGTTCACTCCATTCCCTACCTTTCTGCCTCTGCGCCGCCCCACACATGGAGCTTGGCCTCAGCTTGGGCGACGCCCCCAAGCCCTTCCGCTTTGTCGACAAGCAATCTCAAGTCCCCTCCCCGCAGCGCCGGCTTTCCCGGAAAGATTTAGGGTTCTGTGTCGACTTATCGATTGGCCGTTCGGTCGCCGGAGATAAAGAAGACGACGAAGACAAACCTAATCAAGGAGAAGATGAATCTGATGGTAATGAAGATCCACCGGTTCAACTCGATCTTCTCCCTCATAATCCCGTTCCTCGAAACTTGACTAATCCGTACCAAGGATTTCCATGGCCGTCGTCCGAAAACGATGAAGGCGAAGATCGAACCGCATCGCCGAATAGCGCTGCGTCGTCGTTTCAAATGGAATTTGGACTGTACGGCAGCGGAGGTAACATTTCTTGCCGGAGAGATCAAATGGAAAATGGTGTAATGAACGAAGTAGGTGAATCTGAAAGAGCTTCTTCAAGAGCTAGCGATGAAGACGAGAATGGCTGTACACGGAAGAAACTCAGACTCTCTAAAGAACAATCCGCTTTTCTTGAAGAAAGCTTCAAAGAACACAACACATTGAACCCTAAACAGAAACTGGCACTGGCTAAGCAACTGAATCTTCGTCCTCGCCAAGTGGAAGTTTGGTTTCAAAATAGAAGAGCAAGGACGAAATTGAAGCAAACGGAAGTAGATTGTGAGTATTTGAAAAGATGTTGTGAGACATTAACAGAAGAGAATCGACGGCTTCAAAAGGAGCTTCAAGAATTAAGAGCTTTGAAAACCACAAATTCCCTCTACATGCAATTACCAGCTACAACACTAACCATGTGTCCGTCTTGTGAAAGAGTGACCTCATCTTCCGCCGCTTCCACCGTCGCAGCGACGGAGGGAGTTACAAAACGATCTGGGTTAGCCATTGGTGGTGGGCGACCAGGTTCTTCATCTTTCCCATTTTCTGCTAAAACACAGTCCCACCAGTCAACAGCTTCATGA 1122 47.15 SASALYLFDSSYQYFYTLFFLFSRSPLHSQTLRSLHSLPFCLCAAPHMELGLSLGDAPKPFRFVDKQSQVPSPQRRLSRKDLGFCVDLSIGRSVAGDKEDDEDKPNQGEDESDGNEDPPVQLDLLPHNPVPRNLTNPYQGFPWPSSENDEGEDRTASPNSAASSFQMEFGLYGSGGNISCRRDQMENGVMNEVGESERASSRASDEDENGCTRKKLRLSKEQSAFLEESFKEHNTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCETLTEENRRLQKELQELRALKTTNSLYMQLPATTLTMCPSCERVTSSSAASTVAATEGVTKRSGLAIGGGRPGSSSFPFSAKTQSHQSTAS 373
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 33076673 33078550 - MELO3C023514.2.1 Cme01g02508 319484
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme01g02508 373 Pfam Homeobox associated leucine zipper 269 303 IPR003106 GO:0006355|GO:0043565
Cme01g02508 373 PANTHER - 48 344 - -
Cme01g02508 373 SUPERFAMILY Homeodomain-like 207 270 IPR009057 -
Cme01g02508 373 MobiDBLite consensus disorder prediction 95 160 - -
Cme01g02508 373 Coils Coil 275 305 - -
Cme01g02508 373 MobiDBLite consensus disorder prediction 198 214 - -
Cme01g02508 373 CDD homeodomain 213 270 IPR001356 GO:0003677
Cme01g02508 373 Pfam Homeodomain 213 267 IPR001356 GO:0003677
Cme01g02508 373 MobiDBLite consensus disorder prediction 192 214 - -
Cme01g02508 373 MobiDBLite consensus disorder prediction 342 373 - -
Cme01g02508 373 ProSiteProfiles 'Homeobox' domain profile. 209 269 IPR001356 GO:0003677
Cme01g02508 373 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14 48 344 - -
Cme01g02508 373 MobiDBLite consensus disorder prediction 103 117 - -
Cme01g02508 373 CDD bZIP 262 301 - -
Cme01g02508 373 SMART halz 269 312 IPR003106 GO:0006355|GO:0043565
Cme01g02508 373 SMART HOX_1 211 273 IPR001356 GO:0003677
Cme01g02508 373 Gene3D - 217 267 - -
Cme01g02508 373 ProSitePatterns 'Homeobox' domain signature. 244 267 IPR017970 GO:0000981|GO:0006355
Cme01g02508 373 MobiDBLite consensus disorder prediction 358 373 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme01g02508 Cme-Chr1:33076673 Cme08g00681 Cme-Chr8:4509619 6.31E-75 dispersed
Cme10g01542 Cme-Chr10:19729946 Cme01g02508 Cme-Chr1:33076673 1.76E-20 dispersed
Cme06g00049 Cme-Chr6:338666 Cme01g02508 Cme-Chr1:33076673 3.76E-68 transposed
Cme01g02508 Cme-Chr1:33076673 Cme04g01689 Cme-Chr4:24192692 2.93E-57 wgd
Cme01g02508 Cme-Chr1:33076673 Cme04g02253 Cme-Chr4:29613050 2.73E-84 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
40806 PF00046 Homeodomain 2.80E-15 CL0123 Cme TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme01g02508 K09338 - csv:101221600 610.142