Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme01g02528 ATGAGAGATGATAGAATGGCCACCTCCTTGATTGGTGGTCTCATTCATCAACCTTTAGTACCCAATTTCTCAATTAATTCCAACTTTCTTAACTTCTTGGTTTTGACCCTGCTTTTGGTTTTGCAATTCATTCCTCCTTTTTCTGTTTCAGCTTCTTGCGACCCATCTGATCGGGATTCTCTCTGGTATTTTGTCAATTCTTCATCTGCTTCATCGTCTTTCAATTGGTCTTCCTCGATTGATTGTTGTTTCTGGGAAGGAGTGTTTTGTGAAGCAATCGGTAATAGCGACGACAACCGAGTTACTCAGCTTTTGTTGCCTTCTAGAGGTCTTCGTGGTGAATTCCCTTCATCTCTCACAAACCTTACTTTTCTCTCTCACCTTGATCTCTCCCACAATCGTTTTTATGGTTCTCTCCCTTCTGATTTCTTTAAGTCCTTAAGTCATCTCAAGGAACTGAATTTGAGCTACAACCTTCTCACTGGCCAGTTGCCGCCGCCGCCATCGCCGTCTTCATCGTCCGGCCTCGTGATTGAGACTCTGGATTTGTCTAGTAATCGATTCTATGGGGAAATACCTGCTTCGTTTATCCAGCAGGTGGCAATTTCGGGGAGTTTGACCAGTTTCAATGTCCGCAACAATAGTTTTACAGGTCTCATTCCAACCTCCTTTTGTGTTAATACTACATCCATAAGCTCCGTCAGGTTATTAGACTTTTCCAATAATGCATTCGGCGGAGGAATACCTCAAGGGCTAGAGAAATGCCATGATTTGGAGGTTCTTCGAGCGGGTTTCAATAGTCTTACCGGTCCTATTCCCTCCGACCTTTACAATGTTCTCACTCTAAAGGAGCTTTCTTTACATGTTAATCATCTTTCGGGAAACATCGGCGAGGGAATCGTTAACCTCACCAACCTCAGAATCCTGGAATTGTTCTCGAATTCTTTGGTTGGCCCCATCCCAACAGATATTGGAAAGCTCTCCAAACTGGAACAGTTATCGCTTCACATTAACAATCTCACTGGCACTTTGCCCCCATCATTGATGAATTGCACTAGACTTACTTTGTTGAATTTGCGGGTTAATAAGCTGCAAGGAGATCTCTCTAATGTTAACTTCTCTCGCCTTGTTGGCCTCACCACACTCGACCTGGGCAACAATATGTTCACAGGTAATATACCATCGACTCTTTATTCCTGCAAATCTCTGAAGGCAGTTAGACTGGCTAGTAATCAGTTATCTGGAGAGATCTCTCACGAAATTGCAGCGCTTCAATCACTGTCCTTCATTTCAGTTTCCAAGAATAATCTAACCAATTTAAGTGGAGCACTAAGGAATTTGATGGGTTGCAAAAACCTTGGAACTCTTGTGCTGTCCGGTAGTTATATTGGTGAAGCGTTGCCGGATGAGGATATGATTGTAGATGCCAACACATTTCAAAATATCCAGGCTTTGGCTATTGGAGCTAGTCAGTTAACTGGTAAAGTTCCCTCATGGATACAAAAGCTCAGGAGTCTAGAGGTCTTGGACCTGTCCTTTAATCGCCTTGTGGGTTCAATACCTGAATGGTTAGGTGATTTTCCGAGTCTGTTTTATATTGACTTGTCTAATAACAGAATTTCCGGAGAGTTCCCCACCCAGCTTTGCAGACTGCAGCCTTTGATGTCGCAACAGATTTTAGATCCTGCCAAGCAGAGTTTTCTTGCATTGCCTGTCTTTGTTGCGCCCAGTAATGCTACTAATCAGCAATACAATCAGCTCTCCAGCCTTCCGCCAGCTATATACCTGGGCAACAACACCATAAGTGGCCCTATTCCTTTGGAGATCGGGCAATTAAAGGTTATACATATACTAGACCTCAGCAACAACAGCTTCTCCGGTAGCATCCCAGATACCATTTCCAATCTCAGCAACTTAGAGAGATTAGACCTCTCTCATAACCACCTAACTGGTGAAATCCCCCATTCCCTCAAAGGCCTCCACTTCTTGTCTTGGTTTAGCGTAGCCTTTAACGACCTTCAAGGACCAATACCATCAGGGGGTCAGTTCGATACGTTTCCTAGCTCTAGTTACGAAGGAAACTCAGGGTTGTGCGGTCCTCCCATAGTGCAGCGATCTTGCTCTAACCAGACTAGAATACCCCATTCCACCTCTCAAAATAAAAGCTCCAGTAAGAAACTTGCCATAGGATTAGTCGTGGGTACCTGTTTAAGTATTGGTCTTATCATCACCCTGCTAGCGTTGTGGATATTATCCAAGAGGAGGATTGATCCAAGAGGGGATACCGACATAATAGATTTGGACATAATTTCTATTAGTTCTAATTACAATGCTGACAACAACACTAGCATAGTCATTTTGTTTCCAAATAATGCCAACAACATCAAGGAGCTTACCATTTCTGACATATTGAAGGCCACTGATGATTTCAATCAAGAAAACATAATTGGCTGTGGTGGCTTTGGATTGGTTTACAAAGCTACATTAGCAAATGGGACGAGACTTGCTGTAAAGAAACTCTCGGGAGACTTGGGACTGATGGAAAGGGAATTTAAAGCAGAAGTGGAGGCTCTGTCTGCAGCCAAACACAAGAACCTGGTTACTCTTCAAGGTTACTGTGTGCATGAGGGAAGTCGGCTGCTAATGTATTCATACATGGAAAACGGAAGTTTAGATTATTGGTTGCATGAGAAGGTTGATGGTGCGTCTCAACTTGATTGGCCAACTCGGTTGAAGATTATACGAGGATCAAGTTCTGGATTGGCATACATGCACCAAATATGTGAGCCACATATTGTACACCGGGATATTAAGTCCAGTAACATCTTGCTCGATGAGAAATTTGAAGCTCATGTAGCAGATTTTGGACTATCTAGATTGATCAATCCTTACCAGACTCATGTTACAACCGAACTTGTTGGAACCTTAGGCTACATTCCTCCAGAATATGGACAAGCATGGGTCGCCACTTTGAGAGGAGATATGTACAGCTTTGGTGTGGTCGTGCTCGAGTTGCTTACTGGTAAAAGACCCGTAGAGATATCAAAGCCAAAGGCATCACGAGAGTTGGTTGGCTGGGTGCAACAATTGAGAAATGAGGGCAAACAAGATGAAGTGTTTGACCCCATTTTAAAAGGGAAGGGCTTTGAAGAAGAGATGATCCAGGTTCTCGATATTGCCTGCATGTGTGTCAGTCAGAACCCCTTTAAAAGACCTACCATCAAGGAAGTTGTTGATTGGTTGAAAGATGTGGGGAAGACCAAAGTACCCCAAAGTAAGGATGTGTGA 3288 43.37 MRDDRMATSLIGGLIHQPLVPNFSINSNFLNFLVLTLLLVLQFIPPFSVSASCDPSDRDSLWYFVNSSSASSSFNWSSSIDCCFWEGVFCEAIGNSDDNRVTQLLLPSRGLRGEFPSSLTNLTFLSHLDLSHNRFYGSLPSDFFKSLSHLKELNLSYNLLTGQLPPPPSPSSSSGLVIETLDLSSNRFYGEIPASFIQQVAISGSLTSFNVRNNSFTGLIPTSFCVNTTSISSVRLLDFSNNAFGGGIPQGLEKCHDLEVLRAGFNSLTGPIPSDLYNVLTLKELSLHVNHLSGNIGEGIVNLTNLRILELFSNSLVGPIPTDIGKLSKLEQLSLHINNLTGTLPPSLMNCTRLTLLNLRVNKLQGDLSNVNFSRLVGLTTLDLGNNMFTGNIPSTLYSCKSLKAVRLASNQLSGEISHEIAALQSLSFISVSKNNLTNLSGALRNLMGCKNLGTLVLSGSYIGEALPDEDMIVDANTFQNIQALAIGASQLTGKVPSWIQKLRSLEVLDLSFNRLVGSIPEWLGDFPSLFYIDLSNNRISGEFPTQLCRLQPLMSQQILDPAKQSFLALPVFVAPSNATNQQYNQLSSLPPAIYLGNNTISGPIPLEIGQLKVIHILDLSNNSFSGSIPDTISNLSNLERLDLSHNHLTGEIPHSLKGLHFLSWFSVAFNDLQGPIPSGGQFDTFPSSSYEGNSGLCGPPIVQRSCSNQTRIPHSTSQNKSSSKKLAIGLVVGTCLSIGLIITLLALWILSKRRIDPRGDTDIIDLDIISISSNYNADNNTSIVILFPNNANNIKELTISDILKATDDFNQENIIGCGGFGLVYKATLANGTRLAVKKLSGDLGLMEREFKAEVEALSAAKHKNLVTLQGYCVHEGSRLLMYSYMENGSLDYWLHEKVDGASQLDWPTRLKIIRGSSSGLAYMHQICEPHIVHRDIKSSNILLDEKFEAHVADFGLSRLINPYQTHVTTELVGTLGYIPPEYGQAWVATLRGDMYSFGVVVLELLTGKRPVEISKPKASRELVGWVQQLRNEGKQDEVFDPILKGKGFEEEMIQVLDIACMCVSQNPFKRPTIKEVVDWLKDVGKTKVPQSKDV 1095
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 33253445 33256922 - MELO3C023492.2.1 Cme01g02528 319504
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme01g02528 1095 ProSitePatterns Protein kinases ATP-binding region signature. 816 839 IPR017441 GO:0005524
Cme01g02528 1095 Gene3D Phosphorylase Kinase; domain 1 771 885 - -
Cme01g02528 1095 PRINTS Leucine-rich repeat signature 506 519 - -
Cme01g02528 1095 PRINTS Leucine-rich repeat signature 636 649 - -
Cme01g02528 1095 SMART serkin_6 810 1081 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme01g02528 1095 PANTHER LEUCINE RICH REPEAT KINASE 2 31 1085 - -
Cme01g02528 1095 SUPERFAMILY Protein kinase-like (PK-like) 793 1081 IPR011009 -
Cme01g02528 1095 PANTHER OS06G0692500 PROTEIN 31 1085 - -
Cme01g02528 1095 SMART LRR_typ_2 636 659 IPR003591 -
Cme01g02528 1095 SMART LRR_typ_2 122 146 IPR003591 -
Cme01g02528 1095 SMART LRR_typ_2 327 351 IPR003591 -
Cme01g02528 1095 SMART LRR_typ_2 147 175 IPR003591 -
Cme01g02528 1095 SMART LRR_typ_2 503 527 IPR003591 -
Cme01g02528 1095 SMART LRR_typ_2 376 400 IPR003591 -
Cme01g02528 1095 SMART LRR_typ_2 424 446 IPR003591 -
Cme01g02528 1095 Pfam Leucine rich repeat 125 188 IPR001611 GO:0005515
Cme01g02528 1095 Pfam Leucine rich repeat 616 673 IPR001611 GO:0005515
Cme01g02528 1095 Pfam Leucine rich repeat 481 540 IPR001611 GO:0005515
Cme01g02528 1095 ProSiteProfiles Leucine-rich repeat profile. 638 661 IPR001611 GO:0005515
Cme01g02528 1095 Gene3D Transferase(Phosphotransferase) domain 1 886 1092 - -
Cme01g02528 1095 ProSitePatterns Serine/Threonine protein kinases active-site signature. 932 944 IPR008271 GO:0004672|GO:0006468
Cme01g02528 1095 Pfam Protein kinase domain 811 1079 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme01g02528 1095 ProSiteProfiles Protein kinase domain profile. 810 1081 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme01g02528 1095 SUPERFAMILY L domain-like 491 703 - -
Cme01g02528 1095 SUPERFAMILY L domain-like 101 225 - -
Cme01g02528 1095 Gene3D Ribonuclease Inhibitor 441 714 IPR032675 -
Cme01g02528 1095 Gene3D Ribonuclease Inhibitor 97 440 IPR032675 -
Cme01g02528 1095 SUPERFAMILY RNI-like 181 556 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme01g02528 Cme-Chr1:33253445 Cme06g01191 Cme-Chr6:9341956 0 dispersed
Cme01g02528 Cme-Chr1:33253445 Cme05g00654 Cme-Chr5:7055603 2.65E-07 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
64633 PF00069 Pkinase 5.90E-42 CL0016 Cme PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme01g02528 - - csv:101217884 2064.66