Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme01g02536 ATGGCGAAGATCTCAAATCCTTCACACAACAATTCCATTTCCACTACTCATAATGATCTTCACTCTTCTTCTTCTTCTTCTTCTTCGTCAATACTTCATAGCCAGAGGAAGGTACTGACGAAGCGTACGCGTAAGTCCACTCCTCGTGATTCTCCCGCTCAACGTAGCTCTGTTTACCGCGGAGTCACTAGGCATAGATGGACTGGACGGTTTGAGGCGCATTTGTGGGATAAGAATTGCTGGAATGAAGGACAGAACAAGAAAGGACGTCAAGGAGCGTATGATGATGAAGACGCAGCTGCTCATGCTTACGATCTTGCGGCGCTCAAGTACTGGGGAACTGAAACTGTTCTTAACTTTTCACTATTAACGTACCAAGATGAGCTTAAAGAAATGGAAGGCCAATCAAGAGAAGAGTATATTGGATATTTGAGAAGGAAGAGTAGCGGCTTTTCTCGCGGGGTTTCAAAGTACAGAGGTGTAGCAAGGCACCATCATAATGGAAGATGGGAAGCTCGAATTGGCAGAGTGTTTGGCAACAAATACCTTTACCTTGGAACATATGCTACCCAAGAAGAAGCTGCCGCGGCTTACGACAAGGCGGCCATAGAATACCGTGGCCTTAACGCCGTTACAAATTTCGACCTCAGCCGTTACATCAAATGCCTTCGTCCCGGGGAACAAGATATCCCAAACAATAACCGTCCACCAAACCCTAACGCCGGCGAAACACCGTCACAATTTGACCCCAATTCCCTCCTCGGATTCACTTTCCCCTCACAATGCTCCAGCTCCGGCCAAACCTCCACCGAGCCACTTCCGGAACCTGGCGACGGCGACTCCTCCTCCTCCTCCACGGCCATCGAGCTCCTTCTCCATTCCTCGAATTTCAAAGACATAATCGAAAGAACATCCACTGCAGAGACTCCGCCGGAAACTGATCGGCCACGTCGATGTTTTCCTGACGACATTCAAACTTACTTCGATTGTACTCAAGATTCCGGCGATTTTGCCGAAGGCGACGACGGCATTTTTGGGTACCTAAGTTCGTTTTTACCTTCATCAGTTTTTCACTGCGAACTTGATGCTTAA 1092 48.08 MAKISNPSHNNSISTTHNDLHSSSSSSSSSILHSQRKVLTKRTRKSTPRDSPAQRSSVYRGVTRHRWTGRFEAHLWDKNCWNEGQNKKGRQGAYDDEDAAAHAYDLAALKYWGTETVLNFSLLTYQDELKEMEGQSREEYIGYLRRKSSGFSRGVSKYRGVARHHHNGRWEARIGRVFGNKYLYLGTYATQEEAAAAYDKAAIEYRGLNAVTNFDLSRYIKCLRPGEQDIPNNNRPPNPNAGETPSQFDPNSLLGFTFPSQCSSSGQTSTEPLPEPGDGDSSSSSTAIELLLHSSNFKDIIERTSTAETPPETDRPRRCFPDDIQTYFDCTQDSGDFAEGDDGIFGYLSSFLPSSVFHCELDA 363
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 33317965 33323578 + MELO3C023484.2.1 Cme01g02536 319512
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme01g02536 363 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 27 346 - -
Cme01g02536 363 MobiDBLite consensus disorder prediction 225 285 - -
Cme01g02536 363 MobiDBLite consensus disorder prediction 231 285 - -
Cme01g02536 363 Gene3D AP2/ERF domain 58 122 IPR036955 GO:0003700|GO:0006355
Cme01g02536 363 Gene3D AP2/ERF domain 156 217 IPR036955 GO:0003700|GO:0006355
Cme01g02536 363 SUPERFAMILY DNA-binding domain 156 217 IPR016177 GO:0003677
Cme01g02536 363 SMART rav1_2 58 127 IPR001471 GO:0003700|GO:0006355
Cme01g02536 363 SMART rav1_2 157 221 IPR001471 GO:0003700|GO:0006355
Cme01g02536 363 PRINTS Ethylene responsive element binding protein signature 197 217 IPR001471 GO:0003700|GO:0006355
Cme01g02536 363 PRINTS Ethylene responsive element binding protein signature 59 70 IPR001471 GO:0003700|GO:0006355
Cme01g02536 363 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 27 346 - -
Cme01g02536 363 MobiDBLite consensus disorder prediction 1 36 - -
Cme01g02536 363 Pfam AP2 domain 156 207 IPR001471 GO:0003700|GO:0006355
Cme01g02536 363 Pfam AP2 domain 57 113 IPR001471 GO:0003700|GO:0006355
Cme01g02536 363 ProSiteProfiles AP2/ERF domain profile. 58 121 IPR001471 GO:0003700|GO:0006355
Cme01g02536 363 SUPERFAMILY DNA-binding domain 57 122 IPR016177 GO:0003677
Cme01g02536 363 MobiDBLite consensus disorder prediction 1 59 - -
Cme01g02536 363 CDD AP2 156 217 IPR001471 GO:0003700|GO:0006355
Cme01g02536 363 ProSiteProfiles AP2/ERF domain profile. 157 215 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme01g02536 Cme-Chr1:33317965 Cme02g01029 Cme-Chr2:15244527 1.64E-134 dispersed
Cme01g02536 Cme-Chr1:33317965 Cme08g00672 Cme-Chr8:4410391 3.60E-81 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
40808 PF00847 AP2 1.50E-08 CL0081 Cme TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme01g02536 K09285 - csv:101206499 648.662