Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cme01g02537 | ATGATTGGCGACAAGAAATCGATTATACCTCGTCAATCTTCCTATAACTCTTTGTATTTGAATCCACTCACTGACCTCAGCCACAACCGTAGCTGCAGCGACGGCGGCGGATTCAAGCAAGGTAAAGAGAACTTAACCCCCAATACGAAGGATAAACAGAGAGATGAATCTGCAGTGCTTTGCGACAAAGAAAATGCGATTCCTATTAATGGGTTTTGTGCTAATTCGAAGCAGCAATTTGGGGATTTGAAGTCATTTTCAACTGGAAAGGCTTTGAAGCCTTCTTCACTTCATCTTTGTATGCAAATGAACGAACCTGATAAGGTTTTTGCGACTAGATTGTGGGATGGAACTGATTCTGAACATTCGAGTTCTTTGAAGATATGGGACTTTTCGGATTCAGAAGCTGCTCCAGCTTCCTCATGGTCTACTTTGCCTAACAGGCCATTGCCTGTGGATGTGGGGAGATGTACTTGTGTCATTGTGAAGGAAAAATCACCAGATGGCCTTCATGGTGGAGCTTTCTATTCTCTATACACAAATGAAGGGAAGGGGCGGCAGGACAGAAAGTTGGCGGTGGCTCGTCATCGACGACGAAAAGGGAGGTCAGAGTATAAAATAGCTCAGAGTACAAGGGGGGGAAACCGTCTGAAACCGAGATCGCTTCTGGGTGCTGTAACATTCATGCCTACAATAACCACTTGGACAGGCAGCCATAGGTGCATGAAGGCTTTCATCCCCAAGCATCAATCAATGCAGCTGAAAAACACCAATCAGGTGCAGCACATAGCAGGGCTTCCAAGGGAGTGGGAGGAAGAAAAGGCCAAAGTTCACCAGCTTGTTTCTAAGGTTCCCCAATACAACAAGATTTCTAAGCAATATGAGTTGGACTTTAGAGACAGAGGAAGGGCAGTTTCAGGTCTTATGATCCAAACCTCCGTGAAAAATTTTCAGTTAACTTTAGAGGAAAATGGCAAACAAACAATTCTCCAACTTGGAAGGATTGGGAAGTCTAAGTATGTGATGGATTATAGATATCCACTGACAGGTTATCAAGCATTTTGCATATGTTTGGCTTCCATAGATTCAAAGCTGTGTTGCTCAGTATGA | 1110 | 43.87 | MIGDKKSIIPRQSSYNSLYLNPLTDLSHNRSCSDGGGFKQGKENLTPNTKDKQRDESAVLCDKENAIPINGFCANSKQQFGDLKSFSTGKALKPSSLHLCMQMNEPDKVFATRLWDGTDSEHSSSLKIWDFSDSEAAPASSWSTLPNRPLPVDVGRCTCVIVKEKSPDGLHGGAFYSLYTNEGKGRQDRKLAVARHRRRKGRSEYKIAQSTRGGNRLKPRSLLGAVTFMPTITTWTGSHRCMKAFIPKHQSMQLKNTNQVQHIAGLPREWEEEKAKVHQLVSKVPQYNKISKQYELDFRDRGRAVSGLMIQTSVKNFQLTLEENGKQTILQLGRIGKSKYVMDYRYPLTGYQAFCICLASIDSKLCCSV | 369 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 1 | 33325526 | 33329795 | - | MELO3C023483.2.1 | Cme01g02537 | 319513 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cme01g02537 | 369 | SUPERFAMILY | Tubby C-terminal domain-like | 144 | 367 | IPR025659 | - | |
| Cme01g02537 | 369 | MobiDBLite | consensus disorder prediction | 31 | 55 | - | - | |
| Cme01g02537 | 369 | PANTHER | TUBBY-LIKE PROTEIN 8 | 1 | 213 | - | - | |
| Cme01g02537 | 369 | PANTHER | TUBBY-RELATED | 1 | 213 | - | - | |
| Cme01g02537 | 369 | Pfam | Tub family | 218 | 363 | IPR000007 | - | |
| Cme01g02537 | 369 | PRINTS | Tubby superfamily signature | 325 | 344 | IPR000007 | - | |
| Cme01g02537 | 369 | PRINTS | Tubby superfamily signature | 280 | 297 | IPR000007 | - | |
| Cme01g02537 | 369 | PRINTS | Tubby superfamily signature | 346 | 368 | IPR000007 | - | |
| Cme01g02537 | 369 | PANTHER | TUBBY-LIKE PROTEIN 8 | 219 | 367 | - | - | |
| Cme01g02537 | 369 | PANTHER | TUBBY-RELATED | 219 | 367 | - | - | |
| Cme01g02537 | 369 | Gene3D | Tubby Protein; Chain A | 208 | 368 | IPR025659 | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cme01g02537 | Cme-Chr1:33325526 | Cme06g00687 | Cme-Chr6:4481950 | 2.11E-14 | dispersed | |
| Cme01g02537 | Cme-Chr1:33325526 | Cme04g00548 | Cme-Chr4:4844554 | 3.32E-15 | transposed |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 40809 | PF01167 | Tub | 9.20E-31 | CL0395 | Cme | TF |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cme01g02537 | K19600 | - | csv:101216780 | 698.353 |