Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme01g02548 ATGGGGATATATCTCAGCTCCCCCAAAACAGAAAAGGCCTCAGATGATGGTGAGAATGACAGACTTCGATACGGCCTATCCTCTATGCAAGGGTGGCGTGCAACCATGGAAGATGCTCATGCAGCCTGTCTAGATTTGGACACATCAACATCTTTCTTTGGTGTTTATGACGGCCATGGAGGTAAAGCAGTTTCAAAGTTCTGTGCCAAGTATCTTCACCGACAGGTGCTCAAGCATGAATCATACATGGCTGGAGATCTGGGAACTTCTCTTCAGAAGGCCTTTCTCAGAATGGATGAAATGATGCGGGGACAAAGAGGATGGAGAGAATTAGCTATTTTAGGAGACAAAATGGACAAGATTTCTGGTATGATAGAAGGATTTATATGGTCGCCCAAGGGCAATGAAGCTAACAACCAAGTGGATGATTGGCCTCCGGAGGAGGGACCTCACTCTGACTTTCATGGACCAAATGCTGGAAGTACAGCTTGTGTTGCAATCATACGAAATAACCAACTTGTGGTGGCAAATGCTGGTGATTCTCGCTGTGTCATTTCCAGAAAGGGTCAGGCATATAATCTATCTAAGGATCACAAGCCTGATCTTGAGGTTGAGAAGGACAGAATTCTGAAAGCTGGTGGTTTCATCCGAGTTGGTCGCGTCAATGGCAGTCTCAACTTGGCACGGGCTATAGGAGACATGGAATTTAAGCAGAATAAAAATATGCCCGCAGAAAAGCAGATTGTAACTGCCAATCCAGATATAACAACTGTTGAGCTTTGTGAGGACGATGAATTTCTTGTTATTGCCTGTGATGGGATCTGGGATTGCATGTCCAGCCAACAACTGGTTGATTACATCAGAGATCAACTAAAATCGGAAAATAGACTCTCAGTTGTTTGTGAGAGAGTATTTGACAGATGCTTGGCGCCCACAGCTGGTGGTGAAGGATGTGACAACATGACTATGATTTTGGTTCAGTTCAAGAAACCCTTCAGCAACCCGGAAAACGTGAATGCTGCTTCTACTTCTGCTGAGGAGCCGCCTTCATCGTTCAATCAAACGTTGTCTGATCCGAGTGAAGGTGCTTCTAAGACTGAATAG 1104 45.02 MGIYLSSPKTEKASDDGENDRLRYGLSSMQGWRATMEDAHAACLDLDTSTSFFGVYDGHGGKAVSKFCAKYLHRQVLKHESYMAGDLGTSLQKAFLRMDEMMRGQRGWRELAILGDKMDKISGMIEGFIWSPKGNEANNQVDDWPPEEGPHSDFHGPNAGSTACVAIIRNNQLVVANAGDSRCVISRKGQAYNLSKDHKPDLEVEKDRILKAGGFIRVGRVNGSLNLARAIGDMEFKQNKNMPAEKQIVTANPDITTVELCEDDEFLVIACDGIWDCMSSQQLVDYIRDQLKSENRLSVVCERVFDRCLAPTAGGEGCDNMTMILVQFKKPFSNPENVNAASTSAEEPPSSFNQTLSDPSEGASKTE 367
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 33435260 33440920 + MELO3C023473.2.1 Cme01g02548 319524
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme01g02548 367 PANTHER PROTEIN PHOSPHATASE 2C 1 341 IPR015655 GO:0004722|GO:0006470
Cme01g02548 367 ProSitePatterns PPM-type phosphatase domain signature. 52 60 IPR000222 GO:0043169
Cme01g02548 367 Gene3D - 1 329 IPR036457 -
Cme01g02548 367 MobiDBLite consensus disorder prediction 335 367 - -
Cme01g02548 367 Pfam Protein phosphatase 2C 23 104 IPR001932 -
Cme01g02548 367 Pfam Protein phosphatase 2C 157 313 IPR001932 -
Cme01g02548 367 SUPERFAMILY PP2C-like 3 329 IPR036457 -
Cme01g02548 367 CDD PP2Cc 23 328 IPR001932 -
Cme01g02548 367 PANTHER PROTEIN PHOSPHATASE 2C 60 ISOFORM X1-RELATED 1 341 - -
Cme01g02548 367 SMART PP2C_4 13 326 IPR001932 -
Cme01g02548 367 ProSiteProfiles PPM-type phosphatase domain profile. 23 328 IPR001932 -
Cme01g02548 367 SMART PP2C_SIG_2 28 328 IPR001932 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme01g02548 Cme-Chr1:33435260 Cme03g00021 Cme-Chr3:488587 1.12E-34 dispersed
Cme01g02385 Cme-Chr1:32216538 Cme01g02548 Cme-Chr1:33435260 7.89E-38 transposed
Cme05g01846 Cme-Chr5:27268241 Cme01g02548 Cme-Chr1:33435260 6.47E-40 transposed
Cme06g01157 Cme-Chr6:8916370 Cme01g02548 Cme-Chr1:33435260 3.01E-18 transposed
Cme07g00041 Cme-Chr7:257040 Cme01g02548 Cme-Chr1:33435260 1.93E-39 transposed
Cme01g02548 Cme-Chr1:33435260 Cme07g00132 Cme-Chr7:859454 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme01g02548 K17499 - csv:101214132 736.102