Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cme01g02563 | ATGGCTCGACCACAACAACGCTATCGTGGCGTTCGCCAACGACATTGGGGCTCTTGGGTCTCCGAAATTCGCCACCCTCTATTGAAGACGAGAATATGGTTAGGAACATTTGAGACAGCAGAGGATGCAGCTCGAGCTTATGACGAGGCAGCACGGTTGATGTGCGGTCCAAAAGCGCGAACCAACTTCCCATACAATTTGAACGACCAACAGTCGTCGTCGTCATTTTCCTCCTCCTCCTCCTCCAAGCTTCTCTCTGCCGCATTGATAGAGAAATTACATAAATGTCATTTAGCTTCACTCCAAATCGCAAAACAACACGTCCACAAACAACACCCTGGATTCGAGCCGAGCTACCTTGCATACGGTGGATCACCTCCACCGAGCATTACCGGAGCCACCACTAGCCGTTCCAAATTTCCTCTAGATTTTACCAATACATATATGAGATGGTTAGAATCTTATGGAAATTGA | 474 | 47.89 | MARPQQRYRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARLMCGPKARTNFPYNLNDQQSSSSFSSSSSSKLLSAALIEKLHKCHLASLQIAKQHVHKQHPGFEPSYLAYGGSPPPSITGATTSRSKFPLDFTNTYMRWLESYGN | 157 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 1 | 33532979 | 33534279 | + | MELO3C023458.2.1 | Cme01g02563 | 319539 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cme01g02563 | 157 | PRINTS | Ethylene responsive element binding protein signature | 30 | 46 | IPR001471 | GO:0003700|GO:0006355 | |
| Cme01g02563 | 157 | PRINTS | Ethylene responsive element binding protein signature | 8 | 19 | IPR001471 | GO:0003700|GO:0006355 | |
| Cme01g02563 | 157 | PANTHER | SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR | 1 | 121 | - | - | |
| Cme01g02563 | 157 | CDD | AP2 | 6 | 66 | IPR001471 | GO:0003700|GO:0006355 | |
| Cme01g02563 | 157 | SUPERFAMILY | DNA-binding domain | 7 | 66 | IPR016177 | GO:0003677 | |
| Cme01g02563 | 157 | SMART | rav1_2 | 7 | 70 | IPR001471 | GO:0003700|GO:0006355 | |
| Cme01g02563 | 157 | Pfam | AP2 domain | 7 | 56 | IPR001471 | GO:0003700|GO:0006355 | |
| Cme01g02563 | 157 | Gene3D | AP2/ERF domain | 6 | 66 | IPR036955 | GO:0003700|GO:0006355 | |
| Cme01g02563 | 157 | PANTHER | ETHYLENE RESPONSE FACTOR | 1 | 121 | - | - | |
| Cme01g02563 | 157 | ProSiteProfiles | AP2/ERF domain profile. | 7 | 64 | IPR001471 | GO:0003700|GO:0006355 |
Event-related genes
| Select | Gene_1 | Gene_2 | Event_name |
|---|---|---|---|
| Cme01g02563 | Cme07g02041 | CCT |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cme01g02563 | Cme-Chr1:33532979 | Cme03g01589 | Cme-Chr3:24902355 | 2.41E-50 | dispersed | |
| Cme01g02563 | Cme-Chr1:33532979 | Cme03g01588 | Cme-Chr3:24896021 | 3.27E-47 | wgd | |
| Cme01g02563 | Cme-Chr1:33532979 | Cme07g00103 | Cme-Chr7:640263 | 6.87E-52 | wgd |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 40811 | PF00847 | AP2 | 5.50E-12 | CL0081 | Cme | TF |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cme01g02563 | - | - | cmo:103499832 | 253.832 |