Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme01g02564 ATGGGAGAGAAATTAGGAGTTTGTGCTATGAATCTTCTTCCCATGTGGGTTTTCTATTCTTTGTTCTCAATAATTGATGCCAGACAACACCTTCCTGGTTTCTCAATTTCTTCCACTGTCTTTGCTTCTCACTCACAACCCATCTCTCTCATTGTAGCCAAAATGGAAGCTCAATCCCCAGGAGTTGCTGAGGTTAAAGTAGTTCACCATCAAGATTTGAACAAGAGAATTCTTATTGCATTGATTATTTCTTCCACTCTTCTTGGAGCTATACTGCTGTTCCTTTTGTGTTTTTGGATATATCGTCGAAAAACGTCGAGCAATGATGATGCAAAGTGTCAAAAGAATTTGGAGGCTTCGAAAGGGACGGCACTAAATCCCATAATATCTAGATTTAACTCTTTGAGGTTGGCTAACTTTAAAGGTTCGGTTTCCACTATCGACTATAAATTGTTGGAAGCAGCCACTGATAATTTCAGCAAAAGCAATGTTTTGGGTGAAGGCGGTTCGGGGCACGTTTACAAAGCTTGCTTCAATGATAAATTGCTGGCAGCTGTGAAGAGAATAGACAATGGAGGACTGGACGCTGAAAGAGAATTCGAGAATGAGGTGAACTGGTTGTGTAAAATACGACATCAAAATGTGATCAAACTCTTGGGGCACTGCATTCATGGCGAGACACGGTTTCTCGTTTATGAGATGATGCAGAATGGATCTTTGGAGTCTCAACTGCACGGACCGTCTCACGGATCAGCTTTAACTTGGCATATTCGGATGAAGATTGCTGTTGATGTTGCGAGAATCCCCACTGCTTACATTATTAGAGGCTTGGAATATCTTCATGAGCATCGAAATCCTCCTGTTGTCCATCGGGATTTGAAATCGTCGAATATTCTTCTAGATTCCGACTTTAATGCCAAGCTCTCTGACTTTGGCCTTACTGTCAACTTGGGAGCTCAAAATAAGAACATAAAGCTCTCGGGGACTTTAGGTTACGTCGCCCCAGAATACCTTTTAGACGGTAAACTAACAGATAAAAGTGATGTCTATGCATTCGGAGTTGTCCTTTTGGAGCTTTTGACTGGGAAAATGCCTGTCGAGAAGATGGGACCTACTCAATCTCAATCTCTAGTTTCATGGGCAATCCCACAGCTCAGTGATAGATCAAAGCTACCGAAAATTGTCGATCCCGTGATAAGGGACACAATGGATTTGAAGCACCTATACCAAGTGGCTGCTGTAGCTGTTTTATGTGTACAATCAGAACCAAGCTATCGACCATTAGTTACCGATGTTTTACATTCCCTCATCCCTCTCGTACCTGTAGAGCTCGGAGGATCTCTAAGAATTACAGAACCTCTGCATCCTAAAGTGCCTCCATCGACCCGCTAA 1392 42.46 MGEKLGVCAMNLLPMWVFYSLFSIIDARQHLPGFSISSTVFASHSQPISLIVAKMEAQSPGVAEVKVVHHQDLNKRILIALIISSTLLGAILLFLLCFWIYRRKTSSNDDAKCQKNLEASKGTALNPIISRFNSLRLANFKGSVSTIDYKLLEAATDNFSKSNVLGEGGSGHVYKACFNDKLLAAVKRIDNGGLDAEREFENEVNWLCKIRHQNVIKLLGHCIHGETRFLVYEMMQNGSLESQLHGPSHGSALTWHIRMKIAVDVARIPTAYIIRGLEYLHEHRNPPVVHRDLKSSNILLDSDFNAKLSDFGLTVNLGAQNKNIKLSGTLGYVAPEYLLDGKLTDKSDVYAFGVVLLELLTGKMPVEKMGPTQSQSLVSWAIPQLSDRSKLPKIVDPVIRDTMDLKHLYQVAAVAVLCVQSEPSYRPLVTDVLHSLIPLVPVELGGSLRITEPLHPKVPPSTR 463
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 33540737 33543943 - MELO3C023457.2.1 Cme01g02564 319540
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme01g02564 463 ProSitePatterns Protein kinases ATP-binding region signature. 165 187 IPR017441 GO:0005524
Cme01g02564 463 Pfam Protein kinase domain 160 433 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme01g02564 463 SMART serkin_6 159 437 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme01g02564 463 Gene3D Phosphorylase Kinase; domain 1 122 234 - -
Cme01g02564 463 ProSitePatterns Serine/Threonine protein kinases active-site signature. 288 300 IPR008271 GO:0004672|GO:0006468
Cme01g02564 463 ProSiteProfiles Protein kinase domain profile. 159 437 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme01g02564 463 PANTHER OS01G0750732 PROTEIN 10 455 - -
Cme01g02564 463 PANTHER BNAC02G46490D PROTEIN 10 455 - -
Cme01g02564 463 SUPERFAMILY Protein kinase-like (PK-like) 136 436 IPR011009 -
Cme01g02564 463 Gene3D Transferase(Phosphotransferase) domain 1 235 441 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme01g02564 Cme-Chr1:33540737 Cme02g00113 Cme-Chr2:849433 7.58E-90 dispersed
Cme01g02564 Cme-Chr1:33540737 Cme03g01592 Cme-Chr3:24917943 1.00E-144 wgd
Cme01g02564 Cme-Chr1:33540737 Cme07g00099 Cme-Chr7:629380 4.29E-158 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
64636 PF00069 Pkinase 7.30E-45 CL0016 Cme PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme01g02564 - - csv:101211571 862.448