Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme01g02610 ATGGCTATTCCGTGTTCACCGTCTCCTCGTGGGGGAGAGTTTGAGGAGCTTTACATTGAACTTCTTTCGCGGATCGTGAGAATGGAAGGTACTTCGCTTCACGGAACGCTTCACGCCACTATTTATGAAATCGACAGGTTGCATACTGGTGGTTCATCCAATGTCTTCAGCATGCATATTCTTTTGCTTTTCTTTCATTCAAATGGTTTACTGGAGAGACATTTATTGCAGTTAAGGCAAAACTTTGAGGAGGCTGTCGGAATTGGAAAAGGACAAACCAAACTGTATGCCACTATAGATTTAGAAAAGGCTAGGGTTGGGAGGACACGAATATTGGAATCTGAACCTTCCAATCCAAGATGGTATGAATCTTTTCACATTTACTGTGCCCATAAGGCATCAAATGTTATCTTCACCGTGAAGGATGACAATCCCATTGGTGCAACTTTGATTGGGCGTGCATATGTACCTGTGGAAGACATCGTAGACGGGGAGGAAGTTGACAGATGGGTTCCAATCTTAGATGAAAATCAAAATCCTATTGAAGGGGAATCAAAGATTCATGTCAAACTTCAATACTTCAGTGTTACTAAAGATCGCAATTGGGGTCGTGGTATAAAAAGTCGTAAATTTCCTGGAGTCCCTTATACATATTACTCTCAGAGACAAGGTTGTAAGGTCTCTTTGTATCAAGATGCTCATGTCCCCGATAATTTTATTCCTAAAATACCTCTCGCTGGAGGAAAAAATTATACTCCCGCCAGATGTTGGGAAGATATTTTTGATGCCATAAAAAATGCCAAACACATGATCTACATCACAGGATGGTCTGTTTATACAGAAATTGCCTTGGTGAGGGACTCCAGGAGGCCAAAACCTGGAGGAGACACCATGCTTGGTGAACTGCTTAAGCAGAAAGCAAGTGAAGGGGTCAGGGTTCTTATGCTTGTCTGGGATGACAGAACATCAGTCGGTTTACTTAAAAAAGATGGTTTGATGGCTACTCACGATGAAGAAACTGAACGTTACTTCCAAGATACTGACGTGCACTGTGTGTTGTGCCCTCGTAATCCCGATGATGGTGGAAGCATTGTTCAAGATCTACAAATCTCTACCATGTTCACTCATCACCAGAAGATTGTGGTGGTGGATAGCCCAATGCCAAATGGAGATTCGGATAGGAGGAGAATTGTGAGTTTTGTTGGTGGCATTGATCTCTGTGATGGCAGGACATTGGATACTGCACATCATGACGATTTCCATCAACCAAATTTTGTTGGTGCATCAATAACAAAAGGTGGACCGAGGGAACCTTGGCACGATATCCATTCCCGACTTGAAGGGCCCATTGCCTGGGATGTCTTGTTCAATTTTGAGCAAAGGTGGAAGAAACAAGGTGGGAAGGATGTACTTCTGCAACTTCGTGAGCTTGATGAAATAATTATTCCTCCATCTCCTGTTATGTACCCAGACGACCATGACACCTGGAATGTTCAGTTGTTTAGATCAATAGATGGTGGGGCAGCTTTTGGCTTTCCTGAGACCCCTGAAGATGCTGCTAGAGCTGGACTTGTCAGTGGGAAAGATAACATTATTGATAGAAGCATTCAAGACGCTTACATTAATGCTATCCGACGGGCTAAGAACTTTATTTACATTGAAAACCAATATTTCCTTGGAAGTTGTTTTGGATGGTCTCCTGATAATATCAAGCCTGAGGATATTGGTGCCTTGCACTGTATCCCAAGAGAGCTTTCCCTCAAGATCGTCAGTAAGATTAAAGCAGGGGAAAGGTTCACTGTCTATGTAGTTGTTCCAATGTGGCCAGAAGGTCTGCCGGAAAGTGGATCGGTTCAGGCAATATTAGATTGGCAGAGGAGGACATTAGAAATGATGTATAAAGATGTAATCGAGGCTCTTAGAGAACAAGGTAGCGAGGAAGACCCTCGCAACTACTTGACATTCTTCTGTCTTGGCAACCGGGAAGTCAAGAGGTCTGGAGAATATGAACCTTCAGAAGCACCAGAGGAGGATTCTGATTATTTGAGAGCCCAGCAGGCCAGGCGTTTCATGATTTACGTCCACACCAAAATGATGATTGTTGATGATGAGTACATAATTGTTGGATCGGCAAACATCAACCAAAGATCCATGGATGGTGCAAGGGACTCCGAGATAGCAATGGGCGCTTATCAGCCCTATCATCTCTCAGCTCGTGAACCTGCACGTGGTCAAGTCCACGGATTCCGTATGGCTCTATGGTATGAACATCTCGGTATGCTTGATGAAACTTTCCTTCGTCCAGAAAGTGAAGAATGTATTGCAAAGGTAAACAGAATTGCCGATAAGTATTGGGATATGTATTCAAGTGAATCACTTGAAAGAGACTTGCCCGGTCACCTCCTCCGCTATCCGGTTGGCATATCCAGCGAAGGAGAAGTCACCGAACTCCCAGGCTTTGAGTTCTTCCCCGACACCAAAGCTCGTATACTCGGTACCAAATCCGACTACCTCCCTCCCATCCTCACTACCTAA 2535 43.98 MAIPCSPSPRGGEFEELYIELLSRIVRMEGTSLHGTLHATIYEIDRLHTGGSSNVFSMHILLLFFHSNGLLERHLLQLRQNFEEAVGIGKGQTKLYATIDLEKARVGRTRILESEPSNPRWYESFHIYCAHKASNVIFTVKDDNPIGATLIGRAYVPVEDIVDGEEVDRWVPILDENQNPIEGESKIHVKLQYFSVTKDRNWGRGIKSRKFPGVPYTYYSQRQGCKVSLYQDAHVPDNFIPKIPLAGGKNYTPARCWEDIFDAIKNAKHMIYITGWSVYTEIALVRDSRRPKPGGDTMLGELLKQKASEGVRVLMLVWDDRTSVGLLKKDGLMATHDEETERYFQDTDVHCVLCPRNPDDGGSIVQDLQISTMFTHHQKIVVVDSPMPNGDSDRRRIVSFVGGIDLCDGRTLDTAHHDDFHQPNFVGASITKGGPREPWHDIHSRLEGPIAWDVLFNFEQRWKKQGGKDVLLQLRELDEIIIPPSPVMYPDDHDTWNVQLFRSIDGGAAFGFPETPEDAARAGLVSGKDNIIDRSIQDAYINAIRRAKNFIYIENQYFLGSCFGWSPDNIKPEDIGALHCIPRELSLKIVSKIKAGERFTVYVVVPMWPEGLPESGSVQAILDWQRRTLEMMYKDVIEALREQGSEEDPRNYLTFFCLGNREVKRSGEYEPSEAPEEDSDYLRAQQARRFMIYVHTKMMIVDDEYIIVGSANINQRSMDGARDSEIAMGAYQPYHLSAREPARGQVHGFRMALWYEHLGMLDETFLRPESEECIAKVNRIADKYWDMYSSESLERDLPGHLLRYPVGISSEGEVTELPGFEFFPDTKARILGTKSDYLPPILTT 844
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 33760704 33765104 - MELO3C023415.2.1 Cme01g02610 319586
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme01g02610 844 Gene3D Endonuclease Chain A 516 734 - -
Cme01g02610 844 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 372 410 IPR001736 GO:0003824
Cme01g02610 844 SUPERFAMILY Phospholipase D/nuclease 478 774 - -
Cme01g02610 844 SMART pld_4 372 410 IPR001736 GO:0003824
Cme01g02610 844 SMART pld_4 690 717 IPR001736 GO:0003824
Cme01g02610 844 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 690 717 IPR001736 GO:0003824
Cme01g02610 844 SUPERFAMILY Phospholipase D/nuclease 197 472 - -
Cme01g02610 844 CDD C2_plant_PLD 33 194 - -
Cme01g02610 844 Pfam Phospholipase D C terminal 762 834 IPR024632 -
Cme01g02610 844 Gene3D Endonuclease Chain A 246 478 - -
Cme01g02610 844 Gene3D C2 domain 69 203 IPR035892 -
Cme01g02610 844 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 34 195 IPR035892 -
Cme01g02610 844 PIRSF PLD_plant 23 844 IPR011402 GO:0004630|GO:0005509|GO:0016020|GO:0046470
Cme01g02610 844 Pfam Phospholipase D Active site motif 372 410 IPR001736 GO:0003824
Cme01g02610 844 Pfam Phospholipase D Active site motif 691 717 IPR001736 GO:0003824
Cme01g02610 844 CDD PLDc_pPLDalpha_2 528 737 - -
Cme01g02610 844 SMART C2_3c 77 170 IPR000008 -
Cme01g02610 844 PANTHER PHOSPHOLIPASE D 33 844 IPR015679 -
Cme01g02610 844 PANTHER PHOSPHOLIPASE D 33 844 - -
Cme01g02610 844 Pfam C2 domain 90 173 IPR000008 -
Cme01g02610 844 ProSiteProfiles C2 domain profile. 52 171 IPR000008 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme01g02610 Cme-Chr1:33760704 Cme03g01617 Cme-Chr3:25062581 0 dispersed
Cme01g02610 Cme-Chr1:33760704 Cme07g02065 Cme-Chr7:25517572 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme01g02610 K01115 - csv:101206113 1595.48