Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme01g02615 ATGACATATTTTCCTGGTTTAAGTAATCAAAGAGACTCCATGTTAGGTGATCCGAAACTTGGTCCTTCTTGCCAAGAACAACAGCCTCTTTGTTCTGGGAATTTGATGATGTTCATGAATCAGGACCCTTCTTGCCGAGATTATTCAGAGATTCTTTCTGGGGTTTCTTCAAATTATGTCGAAACTGTGGGAGATAGAAGTAATGTTGAAATGGCTTTCATTCCACCAGTTGTGGGAATTTTAGATGAATCAAATTTCCAATGTCAAGGTGTTTCACTTAGCCTTTCCACACACTCACCTTCAGTTGTTTCTATGTCTTCATTTCCTCACCAATATCAGACCCCTGCTATGGTTTCTTCATTCATTAATGCACCTCCTTCGATCTTGGAGAAGAGGCCGAATCCGAAATCTTGTATATCTGATGTGAAAAATGGCATGTATGTAGCATTGGGTTCTGGTTATTCGATGTTGAATTCGGTATACATTGAAGCTGCACAACAGCTGCTCGATGAAATGGTTAGCATCCGGGAAGCTTTGAAAGAGCTGAAGTCTAAGAAATTGAAAGCTTCCAATGGTTTGGGTGTCGATTCCTGCAGAGAAAATGAAGGGGGATCTAATGATCTGACTGGGGAAATGTGCGGCAATGCAAGGGAGGTGTCGATTGCTAATCCTTCGAGTGATCTATCGCCTTCCGAACGTCAGGACTTGAAGAACAAAAACTCAAAGCTTTTGTCTTTGTTGGGTGAGGTGGATCGAAGATACAAGCAATATTACCAACAACTGCAAATGTTGGCGTCGTCTTTCGACATGGTAGCAGGTCGAGGGGCTGCAGAGTTCTACACTGCACTCCCACACCAAACAATTTCATGCCACTTTCGCCGCTTGCGAGATGCAATTAATGCACAGATTGAGGTCACCAGGAGAACCTTGGGAGAGCAAGATGCTTTACATTCTGGTCAAGAAGGCATTCCCCGTCTCCGCTTTGTCGACCAACACCTCAGGCAACAGAGAGCCCTGCAGCATCTCGGTGTCACTCCACATAGTTGGAGGCCTCAACGAGGGCTTCCTGAAAGCTCCGTGTCTATTCTTCGCGCTTGGCTCTTCGAACACTTCCTCCATCCATATCCGAAGGATTCGGAGAAACTTAAGCTAGCAAGACAAACTGGCCTGACTAGAAACCAAGTTGCAAACTGGTTTATAAATGCGCGTGTTCGACTATGGAAACCAATGGTAGAGGAGATGTACAAAGAAGAATTTGGAGACTCTAACATTGATATCAAATCCTCACCAGAAAATGCATCCAAAGCATCATGGAACAATTCGCTATTCTCCGAAGATAGGGGAGGAGACAAGTTGCACGACAGCACAAAATCTGTAGCAAACAACGGCGAGCGAATCCTCTACCGCCAGTGTGCTACTGACGAAATGATCAACTCGAGTAACTTCACAATGGGAGGCGGAGATGTTTCACTTGCGTTGGAGTTGAAGCATTGTGAAGGCGATGAATTCGGGATGTTTGGGAATAATAACAATAGAATGGTTGGTTCTGTGGAGCTTGAGGCACAGGATTTTCCATGTTTGGAACCAGAAAGGCATCATCAATGCAGACTCACAAGTTCAAATATGTTGCATGATTTTGTAGTTTAA 1647 44.2 MTYFPGLSNQRDSMLGDPKLGPSCQEQQPLCSGNLMMFMNQDPSCRDYSEILSGVSSNYVETVGDRSNVEMAFIPPVVGILDESNFQCQGVSLSLSTHSPSVVSMSSFPHQYQTPAMVSSFINAPPSILEKRPNPKSCISDVKNGMYVALGSGYSMLNSVYIEAAQQLLDEMVSIREALKELKSKKLKASNGLGVDSCRENEGGSNDLTGEMCGNAREVSIANPSSDLSPSERQDLKNKNSKLLSLLGEVDRRYKQYYQQLQMLASSFDMVAGRGAAEFYTALPHQTISCHFRRLRDAINAQIEVTRRTLGEQDALHSGQEGIPRLRFVDQHLRQQRALQHLGVTPHSWRPQRGLPESSVSILRAWLFEHFLHPYPKDSEKLKLARQTGLTRNQVANWFINARVRLWKPMVEEMYKEEFGDSNIDIKSSPENASKASWNNSLFSEDRGGDKLHDSTKSVANNGERILYRQCATDEMINSSNFTMGGGDVSLALELKHCEGDEFGMFGNNNNRMVGSVELEAQDFPCLEPERHHQCRLTSSNMLHDFVV 548
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 33782094 33785965 - MELO3C023409.2.1 Cme01g02615 319591
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme01g02615 548 Gene3D - 346 423 - -
Cme01g02615 548 SMART prehox3 150 301 IPR006563 -
Cme01g02615 548 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 22 464 - -
Cme01g02615 548 CDD homeodomain 349 410 IPR001356 GO:0003677
Cme01g02615 548 SUPERFAMILY Homeodomain-like 350 416 IPR009057 -
Cme01g02615 548 Pfam Homeobox KN domain 366 405 IPR008422 GO:0003677|GO:0006355
Cme01g02615 548 PANTHER BEL1-LIKE HOMEODOMAIN PROTEIN 10 22 464 - -
Cme01g02615 548 Pfam Associated with HOX 157 299 IPR006563 -
Cme01g02615 548 MobiDBLite consensus disorder prediction 1 22 - -
Cme01g02615 548 ProSiteProfiles 'Homeobox' domain profile. 346 409 IPR001356 GO:0003677
Cme01g02615 548 Coils Coil 162 185 - -
Cme01g02615 548 SMART HOX_1 349 413 IPR001356 GO:0003677
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme01g02615 Cme-Chr1:33782094 Cme11g00154 Cme-Chr11:1651284 1.67E-101 dispersed
Cme01g02615 Cme-Chr1:33782094 Cme04g02323 Cme-Chr4:30173085 1.32E-84 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
40814 PF07526 POX 1.10E-38 No_clan Cme TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme01g02615 - - csv:101222692 1043.49