Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme01g02653 ATGAGAAAAGAAGAAAATCATACCAGGGCTAATATTGGAGAATTCCCTGGTAGAATTACACGTGCTCGGGCTGCTGCATTTACTGCATCAGCACAGCTGCCTCCAAGAGTTCCTGCACATCAACATGAGAGACGGGTTGCACGAGCTAATCTGAAAAGAGCCGCTTCTGAAGAAAATAGCTGCAATTCTATTGCTAAATCATCTCGACCATGTAAAAGGAGGGCTGTGCTTCAGGATGTCAGCAATATAGGCTGTGAACCTTCGTACTCAAATTGTTTCAATGCAGCTAAAATTGAGCCCAATAGTAGGAAGACAACAATCAGAAATTATCTCAAGAAGTCCAAAGGAGCCTCATCAGTTGGTGTGGTTAACTCCAAGGTTCCTCTAGGTCCTAAAAACAAAGGAACTTCATCAGTTGGTGCCGCTTACTCCAAGCCTCTTGATCTTAGAACGGAAGGTGTACAAGCAAATGTCAAGTCAAAAGCTAAGTTGAAAGTTGAGCTTTCAAGTAATTCTGAAGACCACAAGACACATCATCGAGTAGGGGGTGTAAAGGAGGAGGTCACAAGTGATTTTCGGGATGATAATTGGAGGTCTCAGAGTCATTCAGAGTCTCAAAATTTTCAAAATAAAGAGAAAGGGTTGCTTCTGGGGACTAGAAGCAACCTGGACATTACAGACATTGATTGTAATGACAGAGATGCTCAGCTGTGCACCGTCTATGCCCAGGATATCTATAACAATTTACGTGTTGCTGAGCTAACCAGAAGACCACGTCCCAATTTCATGGAAACAGTGCAGACTGATATTACCCAAAGCATGCGGGGTATATTGGTTGATTGGCTTGTAGAGGTATCTGAGGAATACAAGTTAGTACCAGATACACTCTACCTAACTGTTTTTTTCATCGATTGGTTTCTCTCCCAAAATTACATCGAGAGACAAAAGCTTCAATTGTTGGGTATCTCTTGCATGTTAATTGCCTCGAAGTATGAAGAAATTTGTGCACCACGTGTTGAAGACTTTTGTTTCATCACTGACAGCACCTACACAAAAGAGGAGGTATTGAATATGGAAGGTCAAATATTGAAGCACATGGGCTTTCAACTTTCTGCACCAACTGCAAAATCTTTCCTCAGGAGATATGTTCGAGCTGCACAAACGACATATAAGACCCCAAGTCTTGAACTCGAGTGCCTCGCCAACTATCTAGCCGAATTAACACTAGTTGACTATGGTTTCTTGAATTTTCTTCCGTCAGTTATAGCTGCATCAGCTGTATTTCTATCCAAATGGACGTTGGATCAGTCAAGTCACCCATGGAATTCAACACTGGAATATTATACCTCATACAAAGCATCAGATCTGAAACAAACTGTTGTTGCTTTACAAGATTTACAGTTGAACACCAATGGTTGCCCTCTTAGTTCGATTCGCGTCAAGTATCGGCAAGAGAAGTTCAAAGCCGTCGCAACTTTGTCTTCCCCAAAATTACTTGATACGCTATTCTGA 1512 41.8 MRKEENHTRANIGEFPGRITRARAAAFTASAQLPPRVPAHQHERRVARANLKRAASEENSCNSIAKSSRPCKRRAVLQDVSNIGCEPSYSNCFNAAKIEPNSRKTTIRNYLKKSKGASSVGVVNSKVPLGPKNKGTSSVGAAYSKPLDLRTEGVQANVKSKAKLKVELSSNSEDHKTHHRVGGVKEEVTSDFRDDNWRSQSHSESQNFQNKEKGLLLGTRSNLDITDIDCNDRDAQLCTVYAQDIYNNLRVAELTRRPRPNFMETVQTDITQSMRGILVDWLVEVSEEYKLVPDTLYLTVFFIDWFLSQNYIERQKLQLLGISCMLIASKYEEICAPRVEDFCFITDSTYTKEEVLNMEGQILKHMGFQLSAPTAKSFLRRYVRAAQTTYKTPSLELECLANYLAELTLVDYGFLNFLPSVIAASAVFLSKWTLDQSSHPWNSTLEYYTSYKASDLKQTVVALQDLQLNTNGCPLSSIRVKYRQEKFKAVATLSSPKLLDTLF 503
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 34000856 34006692 - MELO3C023372.2.1 Cme01g02653 319629
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme01g02653 503 CDD CYCLIN 373 460 IPR013763 -
Cme01g02653 503 Pfam Cyclin, N-terminal domain 244 370 IPR006671 -
Cme01g02653 503 Gene3D - 244 492 - -
Cme01g02653 503 SUPERFAMILY Cyclin-like 373 498 IPR036915 -
Cme01g02653 503 SUPERFAMILY Cyclin-like 234 370 IPR036915 -
Cme01g02653 503 PANTHER CYCLINS 51 503 IPR039361 -
Cme01g02653 503 SMART cyclin_7 377 465 IPR013763 -
Cme01g02653 503 SMART cyclin_7 280 364 IPR013763 -
Cme01g02653 503 Coils Coil 39 59 - -
Cme01g02653 503 CDD CYCLIN 274 363 IPR013763 -
Cme01g02653 503 PIRSF Cyclin_A_B_D_E 34 502 IPR039361 -
Cme01g02653 503 Gene3D - 258 371 - -
Cme01g02653 503 PANTHER CYCLIN-A2-4 51 503 - -
Cme01g02653 503 Pfam Cyclin, C-terminal domain 373 495 IPR004367 -
Cme01g02653 503 SMART Cyclin_C_2 373 496 IPR004367 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme01g00101 Cme-Chr1:705414 Cme01g02653 Cme-Chr1:34000856 1.25E-78 dispersed
Cme01g02653 Cme-Chr1:34000856 Cme03g01666 Cme-Chr3:25418164 9.36E-117 dispersed
Cme01g02653 Cme-Chr1:34000856 Cme04g00381 Cme-Chr4:3058212 1.39E-142 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme01g02653 K06627 - csv:101222299 975.696