Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme01g02672 ATGGGAATCAATTCCAATCGAGTTGAAAATTTGGAATGTCGTGAAACGGTGTTGACGATGCCGGCTGAGACAATGCCGGCGCCGTCTCGACCGGAGGTTGAGATTCATAAAGTTTGTTTACCTCCCAAGCAAACTACGTTTCAGAAACTTAAGCATAAGCTATCGGAGGTGTTCTTCCCTGATGACCCGCTTCATAGATTCAAGAACCAAACGCGGCTTAGGAAATTGCTTTTAGGCCTTCAATTTCTCTTCCCTGTTTTTCAGTGGGGCCCTGATTATACCCTCGCTCTTTTCAAGTCTGATGTCGTTTCTGGTCTTACAATTGCTAGCCTTGCTATTCCTCAGGGAATAAGCTATGCGAAACTAGCAAATTTGCCTCCAATCATCGGATTATATTCAAGTTTTGTGCCTCCACTCATATATTCTATCCTTGGGAGCTCTAGACATCTTGCTGTTGGGCCAGTATCAATTGCCTCTTTGGTCATGGGATCGATGATTACTGAGGCCGTCTCTTATAATGAACACCCAGCTCTGTATCTTAAGTTGGCTTTTACTGCTACCTTCTTTGCTGGTGTATTCCAAGCATCTTTAGGCTTATTAAGGTTAGGCTTTGTAATTGATTTTCTGTCAAAGGCTACTTTAGTTGGCTTTATGGCTGGTGCAGCAGTTATTGTGTCATTGCAACAACTCAAAGGGTTGCTTGGAATTGCCCATTTCACCACCAAAATGCAATTTATTCCTGTCATGTCTTCTGTTTTTCATCGCAAAGATGAGAGCATCAAGAAACCAAAGCTTTTCTGGGTTTCAGCAGCAGCCCCACTGACATCAGTTATTTTGTCCACAATTTTGGTCTTCTTGCTCAAAGCAAAATTTCCTGGAATCTCAGTGATTGGTCATTTGCCAAAGGGTGTCAATCCTCCATCTCTCAACATGCTGTACTTTACTGGTCCTCAGTTGGCACTTGCCATTAAAACTGGCATTATAACTGGAATTCTCTCACTCACCGAAGGAATTGCCGTAGGAAGGACGTTTGCTGGTTTGAAAAACTATCAAGTGGATGGGAATAAGGAAATGATGGCTATTGGTTTTATGAACATGGCTGGATCTTGTTCTTCATGCTATGTCACTACAGGATCATTTTCTCGGTCTGCTGTGAACTACAATGCCGGGGCACAAACAGCAGTTTCAAACGTTGTGATGTCTGCAGCTGTGCTCATAACGTTGTTGTTTCTGATGCCATTGTTCCATTATACTCCGAATTTCATCCTAGCAGCCATCATTATAACAGCAGTAATTGGTTTAATTGATTACCAAGCAGCCTGTAAGTTGTGGAAAGTTGACAAGCTCGATTTTTTGGCTTGTGTTTGTTCTTTCTTTGGCGTTCTTTTCATCTCCGTTCCATTGGGCCTTGCCATCGCAGTTGGAGTTTCTGTCTTCAAGATTCTTCTGCATGTCACCAGGCCAAACACCATGGTTTTGGGGAATATTTCTGGGACTCATATATTCCAAAACCTTGACCGATACCGGGATGCATCAAGGGTGCCTTCATTTCTCATTCTTGCCATTGATTCTCCAATCTACTTCGCAAATTCAACATACCTACAAGAAAGAATTCTTAGGTGGGTTAGGGAAGAAGAAGAGCGGATAAAATCGACTGAAGACAGCCCACTGAAATGTGTAATCCTAGACATGACAGCTGTAACATCCATAGATACAAGTGGTATAGAAACAGTGTGCGAGCTTAGAAAGACATTGATACAAAAATCATTGCAGTTTGTACTAGCAAATCCTGGTGGAAACGTGATGGAAAAACTGTATAAATCAAAGGCGTTGGAGCAGTTCGAATTCAACGGTCTCTACCTTTCAGTTGGAGAAGCTATAAAGGACATTTCTTCTTTATGGAAGAGGGTGCTGCCATAA 1920 42.29 MGINSNRVENLECRETVLTMPAETMPAPSRPEVEIHKVCLPPKQTTFQKLKHKLSEVFFPDDPLHRFKNQTRLRKLLLGLQFLFPVFQWGPDYTLALFKSDVVSGLTIASLAIPQGISYAKLANLPPIIGLYSSFVPPLIYSILGSSRHLAVGPVSIASLVMGSMITEAVSYNEHPALYLKLAFTATFFAGVFQASLGLLRLGFVIDFLSKATLVGFMAGAAVIVSLQQLKGLLGIAHFTTKMQFIPVMSSVFHRKDESIKKPKLFWVSAAAPLTSVILSTILVFLLKAKFPGISVIGHLPKGVNPPSLNMLYFTGPQLALAIKTGIITGILSLTEGIAVGRTFAGLKNYQVDGNKEMMAIGFMNMAGSCSSCYVTTGSFSRSAVNYNAGAQTAVSNVVMSAAVLITLLFLMPLFHYTPNFILAAIIITAVIGLIDYQAACKLWKVDKLDFLACVCSFFGVLFISVPLGLAIAVGVSVFKILLHVTRPNTMVLGNISGTHIFQNLDRYRDASRVPSFLILAIDSPIYFANSTYLQERILRWVREEEERIKSTEDSPLKCVILDMTAVTSIDTSGIETVCELRKTLIQKSLQFVLANPGGNVMEKLYKSKALEQFEFNGLYLSVGEAIKDISSLWKRVLP 639
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 34201307 34205451 + MELO3C024226.2.1 Cme01g02672 319648
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme01g02672 639 PANTHER SULFATE TRANSPORTER 28 636 IPR001902 GO:0015301|GO:0016020|GO:0055085
Cme01g02672 639 SUPERFAMILY SpoIIaa-like 512 628 IPR036513 -
Cme01g02672 639 Pfam Sulfate permease family 98 256 IPR011547 GO:0016021
Cme01g02672 639 Pfam Sulfate permease family 262 455 IPR011547 GO:0016021
Cme01g02672 639 Gene3D STAS domain 487 631 IPR036513 -
Cme01g02672 639 PANTHER SULFATE TRANSPORTER 3.4-RELATED 28 636 IPR030317 -
Cme01g02672 639 Pfam STAS domain 508 626 IPR002645 -
Cme01g02672 639 ProSiteProfiles STAS domain profile. 507 630 IPR002645 -
Cme01g02672 639 CDD STAS_SulP_like_sulfate_transporter 508 623 - -
Cme01g02672 639 ProSitePatterns SLC26A transporters signature. 127 148 IPR018045 GO:0008271|GO:0008272
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme01g02672 Cme-Chr1:34201307 Cme09g00879 Cme-Chr9:11871499 0 dispersed
Cme01g02046 Cme-Chr1:29216975 Cme01g02672 Cme-Chr1:34201307 1.11E-34 transposed
Cme07g00923 Cme-Chr7:9689593 Cme01g02672 Cme-Chr1:34201307 0 transposed
Cme09g00573 Cme-Chr9:5889574 Cme01g02672 Cme-Chr1:34201307 1.06E-96 transposed
Cme10g01488 Cme-Chr10:18577803 Cme01g02672 Cme-Chr1:34201307 0 transposed
Cme01g02672 Cme-Chr1:34201307 Cme02g01332 Cme-Chr2:19261617 2.07E-155 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme01g02672 K17471 - csv:101203079 1187.94