Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme01g02682 ATGTTTCTATTTCCTCAACTCTTTGTATTCTGCTGTTTCTTTGTAGCGCTTGTCATGGCGGAGTTTTCCCATGGCCAGACCACACAAACCAATGATGTTCTTACTCAAGGCCAACCCCTATCAATTGGGTCTCAATTAATTTCATCCACCGCCACTTTTGTGCTAGGATTTTACAATCCTCAAAGTTCTAATTCCACTTACTTGGGAATTTCCTACAACACAAATGACCAGAAACCAATCTGGATAGCCAATCGAAACTCCCCATTTCCCAACAATTCTGCGTCGATCATCCTCATAATCGACGTCAACGGCAGCTTGAAAATCCAAAATGGGAATTATTCCTTTTCACTTTTCAATGGCGGACAACCAACCACCAGCAGCGCCATATTACAAGACGACGGCAACTTTGTACTACGAGAACTGAACAGAGATGGGTCAGTAAAGCAGATTCTGTGGCAGAGCTTTGATCATCCAACAGATACACTGCTTCCCGGAATGAAAATTGGGATCAATCACAAAACTAACTCCACTTGGTCATTAACATCATGGAGAAGCAATGAATATCCGAAGCCAGGAGATTTCAGACTGGGAATGAATCCAAACAATACGTACGAGTTAATGATGTTTATCAGAGATGCTCTGCTTTGGAGGAGTGGGAACTGGAAAGACGGTTCGTTCGAATTCTTGTCATACTATCAAGGAACGATCAATTTCAATCGAGTTTCGAATGAGAACGAAACGTATTTCATTTACTACATCCCAAAACTCGATCGATATTCTGTCCATAGAGATTCATATGAATATTCATATGAATACCGAAACTCAGGGGAATTTATACTACCCCAATTGAGATTAGAAAATGATGGGGTTTTGACAATCAACGATCAAAAATATTTTCCTCTCGCTTGCCTCACCCCTCAAGATGAAGTGGCTAATTCTTGTGTGTGGAAAAAGCAGGACAAAATACCGGAGTGCAGGAATAAGTTGTCTTATGACTACGGTCCGCTCTTTTCGGTGATTAATGGTTACAACTTGGAGAGGATTAATGGTTCTAGTTATTACTACGAACGAAGTGGGAACTTCTCAATGTTTGATTGCCAAAGTATTTGCATTAATGATTGTGATTGCATCGCTTTTGCGATTCCAGCGTACGAGAGTGATTCCGGCTGTGAGTTTTGGAAGTCAGGTGCCGAGTTTAGTACAGATCAGTACGACAGTTCACAAATGATTTGGTCACTGTACACAGATAATTACGAGATTCAAAATGGAAAATGGAAGGTTTGGGTGCAAATAACTGTGGCTCTAACCATACCTGCAACTTTTCTCCTACTCTGTTTTATTATATACGCCAAATGGAGAACACAAATATTCAAAGCTATCAGAAAAGCAAAGAAAGGTTTTCTTCGGGGGATGGGAATGATATCCGAAGGTTACAACATTTTAAGAAAAACGATCATACAAATTAGAGATGGTAAAAAGAACCCTGAATTGCAATTTTTTGACTTCGAAACCATACTCTCTGCTACAAATAATTTTGGAGATGACTGTAAGCTTGGACAAGGTGGTTTCGGACCTGTTTATAAGGGAGTTATGACAGATGGGCAAGAAGTAGCGATTAAAAGACTGTCGAAGAACTCAGGACAAGGATTGGTTGAGTTTAAGAACGAAACTATTTTGATTGCTAAACTTCAACACACAAATTTGGTTAGGCTTATTGGTTGCTGTCTTCATAAAGAAGAGAAATTGTTGGTTTATGAGTATATGCCCAACAAAAGCCTTGACTTTTTCCTCTTTGATTCGGAGAAGAAGTTAATACTTGATTGGGAAAAACGTTTGCACGTCGTCCAAGGAATAGTTCAAGGACTACTCTACCTTCACTACTACTCAAGAGTACGAATAATTCATCGAGATTTAAAAGTTAGCAACATTTTACTCGATGATGAAATGAATGCAAAAATATCGGATTTTGGTATGGCTAGGGTCTTTAAGCCATCAGACAATGAAGCAATCACAAGTCGGGTGGTTGGTACATATGGGTATATATCACCAGAATATGCAATGGAGGGTATTTTCTCAATAAAGTCCGACGTGTACAGTTTTGGAATATTATTGTTGGAGATCATAACAAGTCAAAAGAACTACAACAATTATGACTCAGAACGACCACTCAACCTCGTAGGATATGCATGGGAATTGTGGGTGAATGGGAGAGGAGAAGAGCTTATTGACTTGGGTTTATGCAATTCCGATGATCAAAAAGCAAAGGCCCTAAGGTGCATTCATGTTAGTCTTTTATGTGTCCAACAAATCGCGGCAGATAGGCCGACGATGTTGGATATTTATTTCATGATCAACAATGATTTCGCTCAACTTCCATCTCCCAAACAACCTGCTTTTTTTGTTGCTCAAAACCCGAGTTCCTCCGAAGGGGAAATGGAAGAGGTGGATAGTGAAACTCATACGACCTATAGAACAAACACCAGAAATTTTTTCGTTGAATTCTACGACACTGTCAATGATGGTTGCTAG 2529 39.62 MFLFPQLFVFCCFFVALVMAEFSHGQTTQTNDVLTQGQPLSIGSQLISSTATFVLGFYNPQSSNSTYLGISYNTNDQKPIWIANRNSPFPNNSASIILIIDVNGSLKIQNGNYSFSLFNGGQPTTSSAILQDDGNFVLRELNRDGSVKQILWQSFDHPTDTLLPGMKIGINHKTNSTWSLTSWRSNEYPKPGDFRLGMNPNNTYELMMFIRDALLWRSGNWKDGSFEFLSYYQGTINFNRVSNENETYFIYYIPKLDRYSVHRDSYEYSYEYRNSGEFILPQLRLENDGVLTINDQKYFPLACLTPQDEVANSCVWKKQDKIPECRNKLSYDYGPLFSVINGYNLERINGSSYYYERSGNFSMFDCQSICINDCDCIAFAIPAYESDSGCEFWKSGAEFSTDQYDSSQMIWSLYTDNYEIQNGKWKVWVQITVALTIPATFLLLCFIIYAKWRTQIFKAIRKAKKGFLRGMGMISEGYNILRKTIIQIRDGKKNPELQFFDFETILSATNNFGDDCKLGQGGFGPVYKGVMTDGQEVAIKRLSKNSGQGLVEFKNETILIAKLQHTNLVRLIGCCLHKEEKLLVYEYMPNKSLDFFLFDSEKKLILDWEKRLHVVQGIVQGLLYLHYYSRVRIIHRDLKVSNILLDDEMNAKISDFGMARVFKPSDNEAITSRVVGTYGYISPEYAMEGIFSIKSDVYSFGILLLEIITSQKNYNNYDSERPLNLVGYAWELWVNGRGEELIDLGLCNSDDQKAKALRCIHVSLLCVQQIAADRPTMLDIYFMINNDFAQLPSPKQPAFFVAQNPSSSEGEMEEVDSETHTTYRTNTRNFFVEFYDTVNDGC 842
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 34258055 34267980 - MELO3C024236.2.1 Cme01g02682 319658
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme01g02682 842 Pfam Protein tyrosine and serine/threonine kinase 517 724 IPR001245 GO:0004672|GO:0006468
Cme01g02682 842 SUPERFAMILY Protein kinase-like (PK-like) 495 804 IPR011009 -
Cme01g02682 842 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE CES101 24 816 - -
Cme01g02682 842 ProSiteProfiles Bulb-type lectin domain profile. 31 151 IPR001480 -
Cme01g02682 842 SUPERFAMILY alpha-D-mannose-specific plant lectins 79 188 IPR036426 -
Cme01g02682 842 SMART serkin_6 512 782 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme01g02682 842 Pfam PAN-like domain 361 395 IPR003609 -
Cme01g02682 842 ProSitePatterns Serine/Threonine protein kinases active-site signature. 633 645 IPR008271 GO:0004672|GO:0006468
Cme01g02682 842 Gene3D - 26 156 IPR036426 -
Cme01g02682 842 Gene3D Phosphorylase Kinase; domain 1 486 587 - -
Cme01g02682 842 PIRSF SRK 3 832 IPR024171 GO:0004674
Cme01g02682 842 CDD STKc_IRAK 518 786 - -
Cme01g02682 842 SMART blect_4 31 158 IPR001480 -
Cme01g02682 842 Gene3D Transferase(Phosphotransferase) domain 1 588 792 - -
Cme01g02682 842 ProSiteProfiles Protein kinase domain profile. 512 764 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme01g02682 842 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 24 816 - -
Cme01g02682 842 CDD B_lectin 38 158 IPR001480 -
Cme01g02682 842 ProSiteProfiles PAN/Apple domain profile. 325 408 IPR003609 -
Cme01g02682 842 Pfam D-mannose binding lectin 80 184 IPR001480 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme01g02635 Cme-Chr1:33865463 Cme01g02682 Cme-Chr1:34258055 2.28E-109 dispersed
Cme01g02682 Cme-Chr1:34258055 Cme12g01425 Cme-Chr12:22035451 2.12E-159 dispersed
Cme01g02682 Cme-Chr1:34258055 Cme01g02684 Cme-Chr1:34271361 1.96E-147 proximal
Cme01g02682 Cme-Chr1:34258055 Cme01g02683 Cme-Chr1:34268263 0 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
64638 PF07714 PK_Tyr_Ser-Thr 3.40E-45 CL0016 Cme PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme01g02682 - - csv:101219965 1392.1