Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme01g02683 ATGGAGGTTTGGGTGCCAGTGACTATCGGTCTAGCCCTTTCTACAATTTTTCTTCTACTTTGTTTTATAATATACGCAAATTGGAGAACACAAATCATTGAAGTTCTAGGAAAATTCAAGAAATGTTTTCTACGTAGGATGTGGTTCATAACCGAAGATTGTAAGATATTAGGAATGGTGATCAGACAAATAACAGACTGGAAAAAGAATCCTGAGTTGCAGTTTTTTGACTTTGAAACCATAGTTTCTGCTACAAATAATTTTGGAGATGAATGTAAGCTTGGAAAAGGTGGTTTTGGACCTGTTTATAAGGGAGTTATGACAGATGGGCAAGAAGTAGCGATTAAAAGACTGTCGAAGAACTCAGGACAAGGATTGGTTGAGTTTAAGAACGAAACTATTTTGATTGCTAAACTTCAACACACAAATTTGGTTAGGCTTATTGGTTGCTGTCTTCATAAAGAAGAGAAATTGTTGGTTTATGAGTATATGCCCAACAAAAGCCTTGATTTCTTCCTCTTTGGTAACTTGGAGAAGAAGTTAATATTAGATTGGAAAAAACGCTTGCATGTTATCCAAGGGATAATTCAAGGATTAATTTATCTTCATCACTACTCAAGAATACGAATAATTCATCGGGATCTAAAAGTTAGCAACATCTTACTTGATGATGAGATGAATGCAAAAATATCGGATTTTGGTATGGCTAAAGTGTTCAAACCACCAGAGCATGAAACAAATACAGGTCGGGTGGTTGGTACATATGGCTATATATCACCGGAATATGCAATGGAGGGTATTTTCTCAATAAAGTCGGACGTGTACAGCTTTGGAATACTATTATTGGAGATCGTAACAAGTCGAAAAAACTACAATAATTATGACACAGAACGACCCCTCAATCTCATAGGATACCTGTATGGTTGTATTTTTCAGGCATGGGAACTATGGGTGAATGGGAGAGGAGAAGAGCTCATCGATTCAGGTTTGTTCACCTCTGATGATCAGAAACCAAAAGCTTTAAGATGCATCCATGTCAGTCTTTTATGCGTCCAACAAATCCCAGCGGATAGACCGACGATGTTGGATATTTATTTTATGATCAGCAATGATTCTGCTCAACTTCCATCTCCCAAACAACCTGCTTTTTTTGTTGCTCAAAATCCAAACTCCTCCGAACCTGAAATCGAAGAGGTGAATAATGAACTCATACGACCGCCTGTAGAACCAACACCGGAAATTTATTCATCGAATACCATGACAGTCTCAGTGATGGTTGCTAGATGA 1287 37.61 MEVWVPVTIGLALSTIFLLLCFIIYANWRTQIIEVLGKFKKCFLRRMWFITEDCKILGMVIRQITDWKKNPELQFFDFETIVSATNNFGDECKLGKGGFGPVYKGVMTDGQEVAIKRLSKNSGQGLVEFKNETILIAKLQHTNLVRLIGCCLHKEEKLLVYEYMPNKSLDFFLFGNLEKKLILDWKKRLHVIQGIIQGLIYLHHYSRIRIIHRDLKVSNILLDDEMNAKISDFGMAKVFKPPEHETNTGRVVGTYGYISPEYAMEGIFSIKSDVYSFGILLLEIVTSRKNYNNYDTERPLNLIGYLYGCIFQAWELWVNGRGEELIDSGLFTSDDQKPKALRCIHVSLLCVQQIPADRPTMLDIYFMISNDSAQLPSPKQPAFFVAQNPNSSEPEIEEVNNELIRPPVEPTPEIYSSNTMTVSVMVAR 428
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 34268263 34270351 - MELO3C024238.2.1 Cme01g02683 319659
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme01g02683 428 ProSitePatterns Serine/Threonine protein kinases active-site signature. 210 222 IPR008271 GO:0004672|GO:0006468
Cme01g02683 428 SMART serkin_6 88 366 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme01g02683 428 SUPERFAMILY Protein kinase-like (PK-like) 73 393 IPR011009 -
Cme01g02683 428 Gene3D Transferase(Phosphotransferase) domain 1 164 380 - -
Cme01g02683 428 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 12 384 - -
Cme01g02683 428 ProSiteProfiles Protein kinase domain profile. 88 348 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme01g02683 428 PANTHER OS01G0783800 PROTEIN 12 384 - -
Cme01g02683 428 Pfam Protein tyrosine and serine/threonine kinase 93 301 IPR001245 GO:0004672|GO:0006468
Cme01g02683 428 Gene3D Phosphorylase Kinase; domain 1 62 163 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme01g02683 Cme-Chr1:34268263 Cme12g01428 Cme-Chr12:22054613 1.22E-118 dispersed
Cme01g02682 Cme-Chr1:34258055 Cme01g02683 Cme-Chr1:34268263 0 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
64639 PF07714 PK_Tyr_Ser-Thr 6.80E-45 CL0016 Cme PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme01g02683 - - csv:101219965 657.907