Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme01g02704 ATGGCCGTTGTCATGTCCGACAACCATGCTTCTCGCCGTCTTAAAACCCTTCCTTCTTCTCCGGCTCTCTCCCTCACTCTCGCTGGGGTTTTTGAGAATGCGGGGCCGATGGATGTGGAAGCAGACACGACGGGAAGGAGGGACGATAGCTGTAGTGATAACTCTGAGCCGGCGGGATCGAGGTCGGCGGAGGATTTGGGAGTCGACCCAGATGATGAAGATGAAGATAAATTGCAGGGGAATACAAAGAAGAGGAAGAATCGTCATACTTCGGAGCAAATCAGAGAAATGGAAATGTTGTTTAAAGAATCACCTCATCCAGATGAGAAACAACGGCAACAACTCAGTGAGAAACTTGGTCTTTCATGTAAACAAATCAAGTTCTGGTTTCAGAATCGTAGAACCCAAATCAAGGCTATTCACGAGCGTCACGAAAACGCTTTATTAAAAGGAGAAATGGAGAAATTACGAGAGGAAAATCAAGCGATGAGAGAAATGATAAGTAAATCTTCTTGCCCTAAAGGTTGTTGTTCTGCTTCAACTAATTCCCTAGACCCAGTTTTCAACACTTCTGATCAACAACAACAGCAATTAGTAACTGAAATTGCTCGACTCAAAGCTGAGGTGGAGAGATTAAGAACAGCTCTGGATAAATACGCGCCGGCGGAGACAGAGAACAGCAAGGAGGAAGGAGGAATAGAGAGGGGGAGGAATTTGGAGAAATCGAAGAGTATATTGGGATTGGAGAAAGGTAGAGTTATGTTGATAGGGAAGAGAGCGATTGAGGAGGTGGTGAAAATGGGGGATTCGGAAGAGCCGCTGTGGGTGAGAAGCGTTGAAACAGGAAGAGAGCTATTGAATTACGATGTGTATAGGAAGGAATTGGCGGTAGGAAATGAGAGAGGGAAGAGAGAAGTGGAAGCGTCGAGAGAAACGGGTGTGGTGTTCGCTGATCTTCATCGATTGGTTCAGAGCTTCATGGATGTGGTTCAATGGAAGGAAATGTTTCCGTCGATGATCTCGAAGGCGTCGACTATGGAGGTCGTCTTCAATGGCGACGGTAACAACAGGGATGGTGCAGTTCAACTGATGTTTGCTGAGCTCCAAATGCTGACTCCAACCATCCCTCCAAGAGAGATTTTTTTCGTTCGAAGTTGCAAGCAACTAAGCCCCGGTAAGTGGGTCGTTGCTGATGTCTCCATCGACAAAGTCGGAGACCATCTCGACTCATCTTCCGCCTCTCGTTGTAGGAAACGCCCCTCTGGTTGCATCATCCAAGACACATCTGACGGTCATTGTAAGGTCACATGGGTGGAGCATTGGGAATGTCACAAGATTATTGGACTTCACACCATATACCGAACCATCGTCAATAGCGGTTTGATATTCGGAGCAACGCATTGGATGTCCACGCTACAAATGCATTGTGAGTGGCAGGTTTTCTTCATGGCCACCAACGTTCCCATGAAGGATTCCACCGGAATCACCACTGTTGGTGGGAGAAAAAGTGTTCTTCGATTGGCTCAGAGAATGACCTCTAGTATTTATCAAGCCATCGGTGCTTCCAGCAGCCATACATGGACCAAAGTTCAGAGCAAAATAGGTGAAACCATACGGATTGCTTCCAGGAAGAACTTGAAAAACCCACATGAACCTACTGGTTTGATCTTGTGTGCAGTTGCTTCTGTTTGGCTACCTGTTTCCCCTAAAATCTTGTTCGAATTCTTGATCGATGAAGCTCGCCGTCCCGAGTGGGATGTGATGTTAAGTGGCGGTCAAGTAGAAATGTTAGCAAACTTTGCCAAAGGACAAAATCGAGGCAATGCAGTTACTATCCAAGCAATAAAATCAGACGAAAGCAACAAGTGGATTCTACAAGATAGTCTAACAAATGAATACGAATCAACGGTTGTCTACGCTGAAGTTGACATGAACAGTATGAAGTCTGTAATGGCCGGGTTCGACTCAGGCAACATCACGACATTACCGACAGGGTTCTCAATACTTCCGGATGGCCACCCAACAAGGCCATTGGTTATCAGTTCTAGCAAAGAAGAGAGGGAAACTGGAGGCTCATTGCTAACAGTAGCTTCTCAAATCCTAGTGAGTCCCTCTCCAACAGCCGAAACAACGTCGCAGTCCGTCGAGTATGTTAACAATATTATATCACATACTTTAGAAAATATTAAAGCAAGCCTACAAGGTGAAGATGATTGA 2217 45.83 MAVVMSDNHASRRLKTLPSSPALSLTLAGVFENAGPMDVEADTTGRRDDSCSDNSEPAGSRSAEDLGVDPDDEDEDKLQGNTKKRKNRHTSEQIREMEMLFKESPHPDEKQRQQLSEKLGLSCKQIKFWFQNRRTQIKAIHERHENALLKGEMEKLREENQAMREMISKSSCPKGCCSASTNSLDPVFNTSDQQQQQLVTEIARLKAEVERLRTALDKYAPAETENSKEEGGIERGRNLEKSKSILGLEKGRVMLIGKRAIEEVVKMGDSEEPLWVRSVETGRELLNYDVYRKELAVGNERGKREVEASRETGVVFADLHRLVQSFMDVVQWKEMFPSMISKASTMEVVFNGDGNNRDGAVQLMFAELQMLTPTIPPREIFFVRSCKQLSPGKWVVADVSIDKVGDHLDSSSASRCRKRPSGCIIQDTSDGHCKVTWVEHWECHKIIGLHTIYRTIVNSGLIFGATHWMSTLQMHCEWQVFFMATNVPMKDSTGITTVGGRKSVLRLAQRMTSSIYQAIGASSSHTWTKVQSKIGETIRIASRKNLKNPHEPTGLILCAVASVWLPVSPKILFEFLIDEARRPEWDVMLSGGQVEMLANFAKGQNRGNAVTIQAIKSDESNKWILQDSLTNEYESTVVYAEVDMNSMKSVMAGFDSGNITTLPTGFSILPDGHPTRPLVISSSKEERETGGSLLTVASQILVSPSPTAETTSQSVEYVNNIISHTLENIKASLQGEDD 738
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 34346522 34351204 - MELO3C024256.2.1 Cme01g02704 319680
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme01g02704 738 MobiDBLite consensus disorder prediction 76 92 - -
Cme01g02704 738 SMART START_1 255 478 IPR002913 GO:0008289
Cme01g02704 738 Pfam START domain 259 477 IPR002913 GO:0008289
Cme01g02704 738 ProSiteProfiles START domain profile. 246 481 IPR002913 GO:0008289
Cme01g02704 738 CDD homeodomain 83 138 IPR001356 GO:0003677
Cme01g02704 738 Coils Coil 195 215 - -
Cme01g02704 738 Gene3D - 70 151 - -
Cme01g02704 738 MobiDBLite consensus disorder prediction 1 92 - -
Cme01g02704 738 ProSitePatterns 'Homeobox' domain signature. 115 138 IPR017970 GO:0000981|GO:0006355
Cme01g02704 738 ProSiteProfiles 'Homeobox' domain profile. 80 140 IPR001356 GO:0003677
Cme01g02704 738 SUPERFAMILY Bet v1-like 253 477 - -
Cme01g02704 738 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN GLABRA 2 20 736 - -
Cme01g02704 738 CDD START_ArGLABRA2_like 250 477 - -
Cme01g02704 738 SUPERFAMILY Homeodomain-like 72 139 IPR009057 -
Cme01g02704 738 Coils Coil 139 166 - -
Cme01g02704 738 SUPERFAMILY Bet v1-like 521 725 - -
Cme01g02704 738 Pfam Homeodomain 83 138 IPR001356 GO:0003677
Cme01g02704 738 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 20 736 IPR042160 -
Cme01g02704 738 SMART HOX_1 82 144 IPR001356 GO:0003677
Cme01g02704 738 Gene3D - 255 479 IPR023393 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme01g02704 Cme-Chr1:34346522 Cme11g02549 Cme-Chr11:31886646 3.51E-180 dispersed
Cme05g00191 Cme-Chr5:1336444 Cme01g02704 Cme-Chr1:34346522 7.98E-06 transposed
Cme01g02704 Cme-Chr1:34346522 Cme04g01106 Cme-Chr4:15056994 6.66E-134 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
40819 PF01852 START 5.00E-49 CL0209 Cme TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme01g02704 K09338 - csv:101218545 1389.02