Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme01g02717 ATGGCGTGGTTCACCATTGGAAGCTTTCAAGATTCCTTGAGCTTGCGCTCTTTTAAGGCTTATCTTGCTGAGTTCATCTCCACCTTACTCTTCGTTTTCGCCGGTGTCGGCTCCGCCATTGCATATAATAAAATAACATCATCTGGAGCTTTAGATCCAGCAGGGCTGGTTGGGGTGGCAGTTTGCCATGGATTTGCTCTGTTTGTTGCGGTCTCCATCGGAGCTAACATCTCCGGTGGCCACGTGAACCCAGCGGTGACATTCGGGCTTCTTCTTGGAGATCAAATCAGCCTAATTACCACCATTTTCTACTGGATTGCTCAGCTTCTTGGCTCCATTGTCGCCTGCTACCTTCTCAAATATGTCACTGGCGGCCTCGCGGTTCCGGTCCACAGCGTCGCCGCCGGCATCGGAGCGGCGGAAGGGGTAGTGACGGAGATTGTCACCACCTTCGGTTTGGTTTACACTGTCTATGCGACGGCGGCAGACCCAAAGAAGGGATCTTTGGGCACAATTGCGCCGATTGCCATTGGTTTAATCGTCGGAGCAAACATCTTGGCAGCCGGACCGTTTTCCGGTGGATCGATGAACCCGGCCCGATCTTTCGGCCCGGCGGTTGTCAGTGGCGACTTTCACGATAACTGGATTTACTGGGTTGGGCCGCTCGTTGGCGGTGGCTTAGCTGGGCTTATCTACTTTTACGCCTTTATGGCTTATGGGCCCAGCCCAATTCCAAACGATTTCTAA 747 53.01 MAWFTIGSFQDSLSLRSFKAYLAEFISTLLFVFAGVGSAIAYNKITSSGALDPAGLVGVAVCHGFALFVAVSIGANISGGHVNPAVTFGLLLGDQISLITTIFYWIAQLLGSIVACYLLKYVTGGLAVPVHSVAAGIGAAEGVVTEIVTTFGLVYTVYATAADPKKGSLGTIAPIAIGLIVGANILAAGPFSGGSMNPARSFGPAVVSGDFHDNWIYWVGPLVGGGLAGLIYFYAFMAYGPSPIPNDF 248
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 34410056 34411639 + MELO3C024263.2.1 Cme01g02717 319693
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme01g02717 248 Pfam Major intrinsic protein 14 232 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cme01g02717 248 Gene3D Glycerol uptake facilitator protein. 2 240 IPR023271 -
Cme01g02717 248 PANTHER MIP PROTEIN 1 248 - -
Cme01g02717 248 SUPERFAMILY Aquaporin-like 14 242 IPR023271 -
Cme01g02717 248 ProSitePatterns MIP family signature. 81 89 IPR022357 -
Cme01g02717 248 PRINTS Major intrinsic protein family signature 19 38 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cme01g02717 248 PRINTS Major intrinsic protein family signature 63 87 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cme01g02717 248 PRINTS Major intrinsic protein family signature 100 119 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cme01g02717 248 PRINTS Major intrinsic protein family signature 145 163 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cme01g02717 248 PRINTS Major intrinsic protein family signature 178 200 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cme01g02717 248 PRINTS Major intrinsic protein family signature 215 235 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cme01g02717 248 CDD MIP 19 232 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cme01g02717 248 PANTHER AQUAPORIN-8 1 248 IPR034294 -
Cme01g02717 248 TIGRFAM MIP: MIP family channel proteins 23 232 IPR000425 GO:0015267|GO:0016020|GO:0055085
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme01g02717 Cme-Chr1:34410056 Cme09g01609 Cme-Chr9:20879919 8.57E-117 dispersed
Cme09g01911 Cme-Chr9:23246649 Cme01g02717 Cme-Chr1:34410056 2.61E-33 dispersed
Cme09g01912 Cme-Chr9:23251798 Cme01g02717 Cme-Chr1:34410056 1.18E-29 dispersed
Cme01g02717 Cme-Chr1:34410056 Cme08g01268 Cme-Chr8:9177803 1.74E-97 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme01g02717 K09873 - csv:101218611 480.715