Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme01g02738 ATGGACAGTATTCATCCAAGTGATGGACGGATGCATATTAGCCATGCACCGCATTCGATGCACACGCAATCTGTGCAAGAACAGGAACACCATGACTTGCATTATATGAGTAATGGGAATGGATTGGCTGATGAACATGAAAATGAAGGTCATGGTATTATGGTTGTGGAAAGGGAAGTTCAATCGGACCATGGTGATCTTGCTGAGAATCGTGGTGTAATGGTGGATCGAGGAGGCGAGAACTGCGACCAGCTCACCCTGTCTTATCAGGGTCAAGTTTATGTTTTCGATTCTGTCTCGCCTGAAAAGGTACAAGCCGTATTATTATTATTGGGAGGTCGCGAAGTACCTTTGCGTGTTCCGTCGATCCCAATAACTAATCAACCAAATGATAGGCATCTCACTGATGAAGCGTTTAACCAGGCACTTGCCAATATTCCCCCACGTCTAAGTGTCCCTCAGAGATTAGCTTCTTTGATTAGATTTCGTGAAAAGCGAAAGGAACGTAATTTTGACAAGAAAATTCGGTATACAGTTCGTAAAGAGGTAGCACTTAGGATGCAGCGTAATAAAGGCCAGTTCACATCTTCTAAACCCAGTCATGAAGATTCATCATTGGCCATGGCAAGTTGGGAATCAAATGAGAGCTGGAGTAGTGATGGAAATGGATCCCAACAACAAGAAATTCTCTGTCGACATTGTGGTATTAGTGAGAAGTCAACACCAATGATGCGACGCGGACCTGATGGGCCAAGAACCCTTTGCAATGCTTGCGGACTCATGTGGGCAAACAAGGGAACTCTTCGGGACCTCTCAAAAACTCCAAATCAGGGTGGACAAACTGCAACCTTCAATAGAAATGAGAATGCTGTGCAGAATGGAGATTCCGAGTCCAACCCGAAAGGTGTTTAG 912 44.74 MDSIHPSDGRMHISHAPHSMHTQSVQEQEHHDLHYMSNGNGLADEHENEGHGIMVVEREVQSDHGDLAENRGVMVDRGGENCDQLTLSYQGQVYVFDSVSPEKVQAVLLLLGGREVPLRVPSIPITNQPNDRHLTDEAFNQALANIPPRLSVPQRLASLIRFREKRKERNFDKKIRYTVRKEVALRMQRNKGQFTSSKPSHEDSSLAMASWESNESWSSDGNGSQQQEILCRHCGISEKSTPMMRRGPDGPRTLCNACGLMWANKGTLRDLSKTPNQGGQTATFNRNENAVQNGDSESNPKGV 303
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 34565087 34570361 - MELO3C024287.2.1 Cme01g02738 319714
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme01g02738 303 CDD ZnF_GATA 231 286 IPR000679 GO:0006355|GO:0043565
Cme01g02738 303 MobiDBLite consensus disorder prediction 190 224 - -
Cme01g02738 303 PANTHER GATA TRANSCRIPTION FACTOR 28 4 290 - -
Cme01g02738 303 SMART GATA_3 225 278 IPR000679 GO:0006355|GO:0043565
Cme01g02738 303 Pfam CCT motif 155 197 IPR010402 GO:0005515
Cme01g02738 303 ProSiteProfiles CCT domain profile. 155 197 IPR010402 GO:0005515
Cme01g02738 303 MobiDBLite consensus disorder prediction 1 15 - -
Cme01g02738 303 ProSiteProfiles Tify domain profile. 78 113 IPR010399 -
Cme01g02738 303 SMART tify_2 78 113 IPR010399 -
Cme01g02738 303 ProSitePatterns GATA-type zinc finger domain. 231 258 IPR000679 GO:0006355|GO:0043565
Cme01g02738 303 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 226 289 - -
Cme01g02738 303 Gene3D - 221 289 IPR013088 GO:0006355|GO:0008270
Cme01g02738 303 MobiDBLite consensus disorder prediction 1 28 - -
Cme01g02738 303 Pfam tify domain 84 112 IPR010399 -
Cme01g02738 303 ProSiteProfiles GATA-type zinc finger domain profile. 225 286 IPR000679 GO:0006355|GO:0043565
Cme01g02738 303 MobiDBLite consensus disorder prediction 269 303 - -
Cme01g02738 303 Pfam GATA zinc finger 231 267 IPR000679 GO:0006355|GO:0043565
Cme01g02738 303 PANTHER GATA TRANSCRIPTION FACTOR 28 4 290 IPR045280 GO:0006355
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme01g02738 Cme-Chr1:34565087 Cme03g01815 Cme-Chr3:26519205 2.16E-71 dispersed
Cme01g02738 Cme-Chr1:34565087 Cme04g00035 Cme-Chr4:218657 1.14E-06 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
40822 PF06203 CCT 8.70E-15 CL0281 Cme TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme01g02738 - - cmo:103500623 624.394