Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme01g02755 ATGGATTGGAGGTGGAGGGAGGTGATATCTCTCATCATTCTTTGCATTCTATGGTCGAAGCCTATCTGCATTCAAGGAACCACAGATCCAACAGATGCCTCTGCTTTAAAGGTTTTGTACACCAGTTTAAACTCCCCATCTCAGTTAACCCAGTGGAACGCAAATGGGGATGACCCTTGTGGACAATCATGGAGGGGGATTACTTGCTCCGGCTCACGGAAACTTATCTGGCCTTGGACTCAGTGGATCGCTTGGATACCAGCTTGGAAGTATGACATCGGTAACCAACCTGTAAGGGATGTGAGTAATAACAACCTTGGAGGCGAGATTGGCTACAACCTTCCACCTAAGCTGAAAAGACTAAATCTTGGACGAAACAACTTCAATAAAGGCATCCCTTATTCCGTTTCCTTGATGACTTCTCTTCAATACCTAAACATCAGTCATAATCAGCTTCAGGATCCATTGAATGATGTGTATGGCCAGCTAACTTCCCTATCCATATTGGATCTGTCTTTCAATTCTATGTCAGGCAACCTGCCTCAGAGTTTTAGCTCACTTTCTGGCATCAGCTCTATGAATGTTGAAAATAATCGTTTCACTGGATGGATCCCTGAACCACTGAAAAACATCAACCTGCAGAAAAATGGAAACTCCTGGAACACCGGTCCTGCACCCCCTCCTCCGCCTGGTACACCCCCAGCCACGAGAAGAAACCGAAGTCACAATTCAGGTGGCAGTCCATCCAACGGTGGTTCTAGTGAAGGTCAGAAATCAGGTATCAGCGGTGGTGCCATTGCAGGAATTATTATTTCTGTGCTCGTCGTTGGAGCTGTAGTAGCATTCTTCCTCGTCAGGAGGAGGAGATCCAAGAGACCATTGACGGATATTGAAAAGCTCGACAATCAACCCTTGCAACCTCTTAAAATGACTGCGGCACAAGAAACAAAATCGGAAGATTCTTCCTCCACATTTTATCCAACATCATTTGACACTCCTGCTGCAATTAATCTTAAACCCCCACCTATTGATCGTCATAAATCATTTGACGAAGATGACTTTTCAAAACGAGCCCCAGTCAAGAAGGCTAGTGCTGCAGTTCCTATTAATGTAAAGTCGTATTCAATAGCAGACCTTCAAATGGCGACAGGCAGCTTTAATGTTGATAATCTTCTTGGTGAGGGATCGTTCGGACGCGTATATCGGGCTGAGTTCGATGATGGAAAGGTTCTTGCCGTGAAAAAAATAAATTCATCTGCACTACCTCGGGAATTATCCGAAGATTTCACTGATATTGTTTCTAAAGTCTCCCAATTACACCATCCCAATATAACTGAACTTGTCGGTTATTGTTCAGAGCATGGGCAGCATTTGCTTGTGTACGAGTTCCATAGAAATGGCTCGCTTTACGACGTCTTACATCTATCACTATCAGATGAATACAACAAACCTCTGATATGGAATTTACGTGTTAAGATTGCTCTGGGAACAGCGCGCGCATTAGAGTATCTTCACGAAGTTTGCTCCCCATCGATCGTTCATAGAAACATCAAATCTGCTAACATATTACTGGATGCCGAACTCAGCCCCCATCTTTCTGATTCTGGCCTGGAAAGCTTTATACCAAATACAGATCAGGCATTGGATGGGAGTGGAAGTTCAGGATACACTGCGCCGGAGGTTACCATGTCGGGCCAATATACTCTAAAAAGTGATGTGTATAGTTTTGGAGTAGTCATGTTGGAACTGCTGACTGGACGAAAACCATTTGATAGTTCAAGGCCAAGGTCGGAGCAATCTTTGGTTCGATGGGCAACACCTCAGCTTCATGACATCGATGCTTTAACCAAGATGGTTGATCCCGAACTCAAAGGCCTTTATCCCGTTAAATCTCTCTCCCGATTTGCAGATGTAATTGCACTTTGCGTTCAGACGGAACCTGAGTTTAGACCTCCAATGTCGGAGGTGGTCGAGGCGTTGGTCCGCTTGGTGCAACGAGCAAACATGAGTAAGAGAACATATGGAAGCGACAACGCAACCTCTCCCAGAGGGGAGATGGGTGGAGAGGACACACCATAA 2079 45.07 MDWRWREVISLIILCILWSKPICIQGTTDPTDASALKVLYTSLNSPSQLTQWNANGDDPCGQSWRGITCSGSRKLIWPWTQWIAWIPAWKYDIGNQPVRDVSNNNLGGEIGYNLPPKLKRLNLGRNNFNKGIPYSVSLMTSLQYLNISHNQLQDPLNDVYGQLTSLSILDLSFNSMSGNLPQSFSSLSGISSMNVENNRFTGWIPEPLKNINLQKNGNSWNTGPAPPPPPGTPPATRRNRSHNSGGSPSNGGSSEGQKSGISGGAIAGIIISVLVVGAVVAFFLVRRRRSKRPLTDIEKLDNQPLQPLKMTAAQETKSEDSSSTFYPTSFDTPAAINLKPPPIDRHKSFDEDDFSKRAPVKKASAAVPINVKSYSIADLQMATGSFNVDNLLGEGSFGRVYRAEFDDGKVLAVKKINSSALPRELSEDFTDIVSKVSQLHHPNITELVGYCSEHGQHLLVYEFHRNGSLYDVLHLSLSDEYNKPLIWNLRVKIALGTARALEYLHEVCSPSIVHRNIKSANILLDAELSPHLSDSGLESFIPNTDQALDGSGSSGYTAPEVTMSGQYTLKSDVYSFGVVMLELLTGRKPFDSSRPRSEQSLVRWATPQLHDIDALTKMVDPELKGLYPVKSLSRFADVIALCVQTEPEFRPPMSEVVEALVRLVQRANMSKRTYGSDNATSPRGEMGGEDTP 692
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 34670615 34676323 + MELO3C024302.2.1 Cme01g02755 319731

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme01g02755 692 MobiDBLite consensus disorder prediction 672 692 - -
Cme01g02755 692 Pfam Leucine Rich repeat 140 154 IPR001611 GO:0005515
Cme01g02755 692 Gene3D Transferase(Phosphotransferase) domain 1 465 681 - -
Cme01g02755 692 MobiDBLite consensus disorder prediction 236 259 - -
Cme01g02755 692 SUPERFAMILY Protein kinase-like (PK-like) 368 660 IPR011009 -
Cme01g02755 692 PANTHER PROTEIN STRUBBELIG-RECEPTOR FAMILY 6 192 685 - -
Cme01g02755 692 PANTHER PROTEIN STRUBBELIG-RECEPTOR FAMILY 6 19 194 - -
Cme01g02755 692 SUPERFAMILY L domain-like 58 215 - -
Cme01g02755 692 Gene3D Ribonuclease Inhibitor 28 231 IPR032675 -
Cme01g02755 692 ProSiteProfiles Protein kinase domain profile. 386 663 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme01g02755 692 Gene3D Phosphorylase Kinase; domain 1 351 463 - -
Cme01g02755 692 MobiDBLite consensus disorder prediction 213 259 - -
Cme01g02755 692 PANTHER OS01G0253100 PROTEIN 192 685 IPR045271 GO:0004714|GO:0006468
Cme01g02755 692 PANTHER OS01G0253100 PROTEIN 19 194 IPR045271 GO:0004714|GO:0006468
Cme01g02755 692 MobiDBLite consensus disorder prediction 305 325 - -
Cme01g02755 692 CDD STKc_IRAK 392 663 - -
Cme01g02755 692 ProSitePatterns Protein kinases ATP-binding region signature. 392 415 IPR017441 GO:0005524
Cme01g02755 692 MobiDBLite consensus disorder prediction 307 325 - -
Cme01g02755 692 Pfam Leucine rich repeat N-terminal domain 30 70 IPR013210 -
Cme01g02755 692 Pfam Protein tyrosine and serine/threonine kinase 388 660 IPR001245 GO:0004672|GO:0006468
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme01g02755 - - - csv:101213107 1190.64
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme01g02755 Cme-Chr1:34670615 Cme04g01519 Cme-Chr4:21789300 0 dispersed
Cme01g02755 Cme-Chr1:34670615 Cme08g00325 Cme-Chr8:2068138 3.76E-144 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi9g7 Blo05g00016 . . . . . . Bma13g01189 Cmo08g00808 Cmo17g00626 Cma01g00022 . Car01g00018 Car14g01082 . Cpe12g00545 Cpe17g00420 Bhi01g02818 . . . . . . . . . . . . . . Cone17ag0031 . . Lsi02g02850 Csa07g02300 . Cme01g02755 . Blo10g00947 . . . Bpe09g00053 Bma09g01001 . . Cmo01g00024 . Cma08g00837 Cma17g00644 Car08g00721 Car17g00608 Cpe02g01752 . Bhi09g00253 . . . . . . Cla09g00135 . . . . . . . Csa03g02807 Chy01g02121 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cme01g00355 . 31 786 Strubbelig Receptor Gene Family AT4G03390 61.7 4.9e-205 711.4
Cme01g02755 . 355 681 Strubbelig Receptor Gene Family AT4G03390 55.1 1.1e-90 331.6
Cme04g02226 . 4 637 Strubbelig Receptor Gene Family AT5G06820 51.7 2.0e-160 563.1
Cme03g00822 . 4 674 Strubbelig Receptor Gene Family AT1G78980 59.7 2.0e-181 632.9
Cme04g01519 . 23 719 Strubbelig Receptor Gene Family AT1G78980 50.1 6.9e-150 528.1
Cme03g00822 . 4 652 Strubbelig Receptor Gene Family AT3G13065 55.0 1.4e-139 493.8
Cme01g02755 . 371 664 Strubbelig Receptor Gene Family AT3G13065 60.5 1.6e-98 357.5
Cme12g00906 . 458 751 Strubbelig Receptor Gene Family AT1G11130 53.7 5.9e-85 312.4
Cme04g02226 . 4 637 Strubbelig Receptor Gene Family AT5G06820 51.7 2.0e-160 563.1
Cme01g00355 . 31 786 Strubbelig Receptor Gene Family AT4G03390 61.7 4.9e-205 711.4
Cme01g02755 . 355 681 Strubbelig Receptor Gene Family AT4G03390 55.1 1.1e-90 331.6
Cme03g00822 . 4 652 Strubbelig Receptor Gene Family AT3G13065 55.0 1.4e-139 493.8
Cme01g02755 . 371 664 Strubbelig Receptor Gene Family AT3G13065 60.5 1.6e-98 357.5
Cme03g00822 . 4 674 Strubbelig Receptor Gene Family AT1G78980 59.7 2.0e-181 632.9
Cme04g01519 . 23 719 Strubbelig Receptor Gene Family AT1G78980 50.1 6.9e-150 528.1
Cme04g01519 . 1 719 Strubbelig Receptor Gene Family AT1G53730 58.3 3.7e-207 718.4
Cme01g02755 . 1 691 Strubbelig Receptor Gene Family AT1G53730 59.0 5.1e-172 601.7
Cme03g00822 . 5 660 Strubbelig Receptor Gene Family AT1G53730 51.5 1.1e-150 530.8
Cme12g00906 . 79 759 Strubbelig Receptor Gene Family AT1G53730 50.6 4.6e-149 525.4
Cme04g01519 . 11 714 Strubbelig Receptor Gene Family AT3G14350 53.8 2.4e-187 652.5
Cme01g02755 . 6 681 Strubbelig Receptor Gene Family AT3G14350 53.5 1.0e-153 540.8
Cme12g00906 . 208 781 Strubbelig Receptor Gene Family AT4G22130 63.0 3.3e-179 625.2
Cme04g01519 . 398 719 Strubbelig Receptor Gene Family AT4G22130 63.3 1.9e-118 423.3
Cme01g02755 . 368 683 Strubbelig Receptor Gene Family AT4G22130 65.1 8.1e-117 417.9
Cme01g00355 . 454 778 Strubbelig Receptor Gene Family AT4G22130 56.8 2.9e-106 382.9
Cme03g00822 . 355 674 Strubbelig Receptor Gene Family AT4G22130 57.1 1.5e-99 360.5
Cme08g00325 . 367 655 Strubbelig Receptor Gene Family AT4G22130 60.5 1.3e-98 357.5
Cme04g02226 . 299 621 Strubbelig Receptor Gene Family AT4G22130 50.5 4.2e-89 325.9
Cme04g02225 . 334 624 Strubbelig Receptor Gene Family AT4G22130 51.2 1.7e-77 287.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001486 0 7 2 3 1 2 4 1 2 2 2 2 4 2 2 4 2 3 4 2 2 2 2 1 1 2 2 1 1 1 66
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
64640 PF07714 PK_Tyr_Ser-Thr 3.90E-42 CL0016 Cme PK