Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme01g02755 ATGGATTGGAGGTGGAGGGAGGTGATATCTCTCATCATTCTTTGCATTCTATGGTCGAAGCCTATCTGCATTCAAGGAACCACAGATCCAACAGATGCCTCTGCTTTAAAGGTTTTGTACACCAGTTTAAACTCCCCATCTCAGTTAACCCAGTGGAACGCAAATGGGGATGACCCTTGTGGACAATCATGGAGGGGGATTACTTGCTCCGGCTCACGGAAACTTATCTGGCCTTGGACTCAGTGGATCGCTTGGATACCAGCTTGGAAGTATGACATCGGTAACCAACCTGTAAGGGATGTGAGTAATAACAACCTTGGAGGCGAGATTGGCTACAACCTTCCACCTAAGCTGAAAAGACTAAATCTTGGACGAAACAACTTCAATAAAGGCATCCCTTATTCCGTTTCCTTGATGACTTCTCTTCAATACCTAAACATCAGTCATAATCAGCTTCAGGATCCATTGAATGATGTGTATGGCCAGCTAACTTCCCTATCCATATTGGATCTGTCTTTCAATTCTATGTCAGGCAACCTGCCTCAGAGTTTTAGCTCACTTTCTGGCATCAGCTCTATGAATGTTGAAAATAATCGTTTCACTGGATGGATCCCTGAACCACTGAAAAACATCAACCTGCAGAAAAATGGAAACTCCTGGAACACCGGTCCTGCACCCCCTCCTCCGCCTGGTACACCCCCAGCCACGAGAAGAAACCGAAGTCACAATTCAGGTGGCAGTCCATCCAACGGTGGTTCTAGTGAAGGTCAGAAATCAGGTATCAGCGGTGGTGCCATTGCAGGAATTATTATTTCTGTGCTCGTCGTTGGAGCTGTAGTAGCATTCTTCCTCGTCAGGAGGAGGAGATCCAAGAGACCATTGACGGATATTGAAAAGCTCGACAATCAACCCTTGCAACCTCTTAAAATGACTGCGGCACAAGAAACAAAATCGGAAGATTCTTCCTCCACATTTTATCCAACATCATTTGACACTCCTGCTGCAATTAATCTTAAACCCCCACCTATTGATCGTCATAAATCATTTGACGAAGATGACTTTTCAAAACGAGCCCCAGTCAAGAAGGCTAGTGCTGCAGTTCCTATTAATGTAAAGTCGTATTCAATAGCAGACCTTCAAATGGCGACAGGCAGCTTTAATGTTGATAATCTTCTTGGTGAGGGATCGTTCGGACGCGTATATCGGGCTGAGTTCGATGATGGAAAGGTTCTTGCCGTGAAAAAAATAAATTCATCTGCACTACCTCGGGAATTATCCGAAGATTTCACTGATATTGTTTCTAAAGTCTCCCAATTACACCATCCCAATATAACTGAACTTGTCGGTTATTGTTCAGAGCATGGGCAGCATTTGCTTGTGTACGAGTTCCATAGAAATGGCTCGCTTTACGACGTCTTACATCTATCACTATCAGATGAATACAACAAACCTCTGATATGGAATTTACGTGTTAAGATTGCTCTGGGAACAGCGCGCGCATTAGAGTATCTTCACGAAGTTTGCTCCCCATCGATCGTTCATAGAAACATCAAATCTGCTAACATATTACTGGATGCCGAACTCAGCCCCCATCTTTCTGATTCTGGCCTGGAAAGCTTTATACCAAATACAGATCAGGCATTGGATGGGAGTGGAAGTTCAGGATACACTGCGCCGGAGGTTACCATGTCGGGCCAATATACTCTAAAAAGTGATGTGTATAGTTTTGGAGTAGTCATGTTGGAACTGCTGACTGGACGAAAACCATTTGATAGTTCAAGGCCAAGGTCGGAGCAATCTTTGGTTCGATGGGCAACACCTCAGCTTCATGACATCGATGCTTTAACCAAGATGGTTGATCCCGAACTCAAAGGCCTTTATCCCGTTAAATCTCTCTCCCGATTTGCAGATGTAATTGCACTTTGCGTTCAGACGGAACCTGAGTTTAGACCTCCAATGTCGGAGGTGGTCGAGGCGTTGGTCCGCTTGGTGCAACGAGCAAACATGAGTAAGAGAACATATGGAAGCGACAACGCAACCTCTCCCAGAGGGGAGATGGGTGGAGAGGACACACCATAA 2079 45.07 MDWRWREVISLIILCILWSKPICIQGTTDPTDASALKVLYTSLNSPSQLTQWNANGDDPCGQSWRGITCSGSRKLIWPWTQWIAWIPAWKYDIGNQPVRDVSNNNLGGEIGYNLPPKLKRLNLGRNNFNKGIPYSVSLMTSLQYLNISHNQLQDPLNDVYGQLTSLSILDLSFNSMSGNLPQSFSSLSGISSMNVENNRFTGWIPEPLKNINLQKNGNSWNTGPAPPPPPGTPPATRRNRSHNSGGSPSNGGSSEGQKSGISGGAIAGIIISVLVVGAVVAFFLVRRRRSKRPLTDIEKLDNQPLQPLKMTAAQETKSEDSSSTFYPTSFDTPAAINLKPPPIDRHKSFDEDDFSKRAPVKKASAAVPINVKSYSIADLQMATGSFNVDNLLGEGSFGRVYRAEFDDGKVLAVKKINSSALPRELSEDFTDIVSKVSQLHHPNITELVGYCSEHGQHLLVYEFHRNGSLYDVLHLSLSDEYNKPLIWNLRVKIALGTARALEYLHEVCSPSIVHRNIKSANILLDAELSPHLSDSGLESFIPNTDQALDGSGSSGYTAPEVTMSGQYTLKSDVYSFGVVMLELLTGRKPFDSSRPRSEQSLVRWATPQLHDIDALTKMVDPELKGLYPVKSLSRFADVIALCVQTEPEFRPPMSEVVEALVRLVQRANMSKRTYGSDNATSPRGEMGGEDTP 692
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 34670615 34676323 + MELO3C024302.2.1 Cme01g02755 319731
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme01g02755 692 MobiDBLite consensus disorder prediction 672 692 - -
Cme01g02755 692 Pfam Leucine Rich repeat 140 154 IPR001611 GO:0005515
Cme01g02755 692 Gene3D Transferase(Phosphotransferase) domain 1 465 681 - -
Cme01g02755 692 MobiDBLite consensus disorder prediction 236 259 - -
Cme01g02755 692 SUPERFAMILY Protein kinase-like (PK-like) 368 660 IPR011009 -
Cme01g02755 692 PANTHER PROTEIN STRUBBELIG-RECEPTOR FAMILY 6 192 685 - -
Cme01g02755 692 PANTHER PROTEIN STRUBBELIG-RECEPTOR FAMILY 6 19 194 - -
Cme01g02755 692 SUPERFAMILY L domain-like 58 215 - -
Cme01g02755 692 Gene3D Ribonuclease Inhibitor 28 231 IPR032675 -
Cme01g02755 692 ProSiteProfiles Protein kinase domain profile. 386 663 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme01g02755 692 Gene3D Phosphorylase Kinase; domain 1 351 463 - -
Cme01g02755 692 MobiDBLite consensus disorder prediction 213 259 - -
Cme01g02755 692 PANTHER OS01G0253100 PROTEIN 192 685 IPR045271 GO:0004714|GO:0006468
Cme01g02755 692 PANTHER OS01G0253100 PROTEIN 19 194 IPR045271 GO:0004714|GO:0006468
Cme01g02755 692 MobiDBLite consensus disorder prediction 305 325 - -
Cme01g02755 692 CDD STKc_IRAK 392 663 - -
Cme01g02755 692 ProSitePatterns Protein kinases ATP-binding region signature. 392 415 IPR017441 GO:0005524
Cme01g02755 692 MobiDBLite consensus disorder prediction 307 325 - -
Cme01g02755 692 Pfam Leucine rich repeat N-terminal domain 30 70 IPR013210 -
Cme01g02755 692 Pfam Protein tyrosine and serine/threonine kinase 388 660 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme01g02755 Cme-Chr1:34670615 Cme04g01519 Cme-Chr4:21789300 0 dispersed
Cme01g02755 Cme-Chr1:34670615 Cme08g00325 Cme-Chr8:2068138 3.76E-144 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
64640 PF07714 PK_Tyr_Ser-Thr 3.90E-42 CL0016 Cme PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme01g02755 - - csv:101213107 1190.64