Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cme01g02755 | ATGGATTGGAGGTGGAGGGAGGTGATATCTCTCATCATTCTTTGCATTCTATGGTCGAAGCCTATCTGCATTCAAGGAACCACAGATCCAACAGATGCCTCTGCTTTAAAGGTTTTGTACACCAGTTTAAACTCCCCATCTCAGTTAACCCAGTGGAACGCAAATGGGGATGACCCTTGTGGACAATCATGGAGGGGGATTACTTGCTCCGGCTCACGGAAACTTATCTGGCCTTGGACTCAGTGGATCGCTTGGATACCAGCTTGGAAGTATGACATCGGTAACCAACCTGTAAGGGATGTGAGTAATAACAACCTTGGAGGCGAGATTGGCTACAACCTTCCACCTAAGCTGAAAAGACTAAATCTTGGACGAAACAACTTCAATAAAGGCATCCCTTATTCCGTTTCCTTGATGACTTCTCTTCAATACCTAAACATCAGTCATAATCAGCTTCAGGATCCATTGAATGATGTGTATGGCCAGCTAACTTCCCTATCCATATTGGATCTGTCTTTCAATTCTATGTCAGGCAACCTGCCTCAGAGTTTTAGCTCACTTTCTGGCATCAGCTCTATGAATGTTGAAAATAATCGTTTCACTGGATGGATCCCTGAACCACTGAAAAACATCAACCTGCAGAAAAATGGAAACTCCTGGAACACCGGTCCTGCACCCCCTCCTCCGCCTGGTACACCCCCAGCCACGAGAAGAAACCGAAGTCACAATTCAGGTGGCAGTCCATCCAACGGTGGTTCTAGTGAAGGTCAGAAATCAGGTATCAGCGGTGGTGCCATTGCAGGAATTATTATTTCTGTGCTCGTCGTTGGAGCTGTAGTAGCATTCTTCCTCGTCAGGAGGAGGAGATCCAAGAGACCATTGACGGATATTGAAAAGCTCGACAATCAACCCTTGCAACCTCTTAAAATGACTGCGGCACAAGAAACAAAATCGGAAGATTCTTCCTCCACATTTTATCCAACATCATTTGACACTCCTGCTGCAATTAATCTTAAACCCCCACCTATTGATCGTCATAAATCATTTGACGAAGATGACTTTTCAAAACGAGCCCCAGTCAAGAAGGCTAGTGCTGCAGTTCCTATTAATGTAAAGTCGTATTCAATAGCAGACCTTCAAATGGCGACAGGCAGCTTTAATGTTGATAATCTTCTTGGTGAGGGATCGTTCGGACGCGTATATCGGGCTGAGTTCGATGATGGAAAGGTTCTTGCCGTGAAAAAAATAAATTCATCTGCACTACCTCGGGAATTATCCGAAGATTTCACTGATATTGTTTCTAAAGTCTCCCAATTACACCATCCCAATATAACTGAACTTGTCGGTTATTGTTCAGAGCATGGGCAGCATTTGCTTGTGTACGAGTTCCATAGAAATGGCTCGCTTTACGACGTCTTACATCTATCACTATCAGATGAATACAACAAACCTCTGATATGGAATTTACGTGTTAAGATTGCTCTGGGAACAGCGCGCGCATTAGAGTATCTTCACGAAGTTTGCTCCCCATCGATCGTTCATAGAAACATCAAATCTGCTAACATATTACTGGATGCCGAACTCAGCCCCCATCTTTCTGATTCTGGCCTGGAAAGCTTTATACCAAATACAGATCAGGCATTGGATGGGAGTGGAAGTTCAGGATACACTGCGCCGGAGGTTACCATGTCGGGCCAATATACTCTAAAAAGTGATGTGTATAGTTTTGGAGTAGTCATGTTGGAACTGCTGACTGGACGAAAACCATTTGATAGTTCAAGGCCAAGGTCGGAGCAATCTTTGGTTCGATGGGCAACACCTCAGCTTCATGACATCGATGCTTTAACCAAGATGGTTGATCCCGAACTCAAAGGCCTTTATCCCGTTAAATCTCTCTCCCGATTTGCAGATGTAATTGCACTTTGCGTTCAGACGGAACCTGAGTTTAGACCTCCAATGTCGGAGGTGGTCGAGGCGTTGGTCCGCTTGGTGCAACGAGCAAACATGAGTAAGAGAACATATGGAAGCGACAACGCAACCTCTCCCAGAGGGGAGATGGGTGGAGAGGACACACCATAA | 2079 | 45.07 | MDWRWREVISLIILCILWSKPICIQGTTDPTDASALKVLYTSLNSPSQLTQWNANGDDPCGQSWRGITCSGSRKLIWPWTQWIAWIPAWKYDIGNQPVRDVSNNNLGGEIGYNLPPKLKRLNLGRNNFNKGIPYSVSLMTSLQYLNISHNQLQDPLNDVYGQLTSLSILDLSFNSMSGNLPQSFSSLSGISSMNVENNRFTGWIPEPLKNINLQKNGNSWNTGPAPPPPPGTPPATRRNRSHNSGGSPSNGGSSEGQKSGISGGAIAGIIISVLVVGAVVAFFLVRRRRSKRPLTDIEKLDNQPLQPLKMTAAQETKSEDSSSTFYPTSFDTPAAINLKPPPIDRHKSFDEDDFSKRAPVKKASAAVPINVKSYSIADLQMATGSFNVDNLLGEGSFGRVYRAEFDDGKVLAVKKINSSALPRELSEDFTDIVSKVSQLHHPNITELVGYCSEHGQHLLVYEFHRNGSLYDVLHLSLSDEYNKPLIWNLRVKIALGTARALEYLHEVCSPSIVHRNIKSANILLDAELSPHLSDSGLESFIPNTDQALDGSGSSGYTAPEVTMSGQYTLKSDVYSFGVVMLELLTGRKPFDSSRPRSEQSLVRWATPQLHDIDALTKMVDPELKGLYPVKSLSRFADVIALCVQTEPEFRPPMSEVVEALVRLVQRANMSKRTYGSDNATSPRGEMGGEDTP | 692 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 34670615 | 34676323 | + | MELO3C024302.2.1 | Cme01g02755 | 319731 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cme01g02755 | 692 | MobiDBLite | consensus disorder prediction | 672 | 692 | - | - | |
Cme01g02755 | 692 | Pfam | Leucine Rich repeat | 140 | 154 | IPR001611 | GO:0005515 | |
Cme01g02755 | 692 | Gene3D | Transferase(Phosphotransferase) domain 1 | 465 | 681 | - | - | |
Cme01g02755 | 692 | MobiDBLite | consensus disorder prediction | 236 | 259 | - | - | |
Cme01g02755 | 692 | SUPERFAMILY | Protein kinase-like (PK-like) | 368 | 660 | IPR011009 | - | |
Cme01g02755 | 692 | PANTHER | PROTEIN STRUBBELIG-RECEPTOR FAMILY 6 | 192 | 685 | - | - | |
Cme01g02755 | 692 | PANTHER | PROTEIN STRUBBELIG-RECEPTOR FAMILY 6 | 19 | 194 | - | - | |
Cme01g02755 | 692 | SUPERFAMILY | L domain-like | 58 | 215 | - | - | |
Cme01g02755 | 692 | Gene3D | Ribonuclease Inhibitor | 28 | 231 | IPR032675 | - | |
Cme01g02755 | 692 | ProSiteProfiles | Protein kinase domain profile. | 386 | 663 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cme01g02755 | 692 | Gene3D | Phosphorylase Kinase; domain 1 | 351 | 463 | - | - | |
Cme01g02755 | 692 | MobiDBLite | consensus disorder prediction | 213 | 259 | - | - | |
Cme01g02755 | 692 | PANTHER | OS01G0253100 PROTEIN | 192 | 685 | IPR045271 | GO:0004714|GO:0006468 | |
Cme01g02755 | 692 | PANTHER | OS01G0253100 PROTEIN | 19 | 194 | IPR045271 | GO:0004714|GO:0006468 | |
Cme01g02755 | 692 | MobiDBLite | consensus disorder prediction | 305 | 325 | - | - | |
Cme01g02755 | 692 | CDD | STKc_IRAK | 392 | 663 | - | - | |
Cme01g02755 | 692 | ProSitePatterns | Protein kinases ATP-binding region signature. | 392 | 415 | IPR017441 | GO:0005524 | |
Cme01g02755 | 692 | MobiDBLite | consensus disorder prediction | 307 | 325 | - | - | |
Cme01g02755 | 692 | Pfam | Leucine rich repeat N-terminal domain | 30 | 70 | IPR013210 | - | |
Cme01g02755 | 692 | Pfam | Protein tyrosine and serine/threonine kinase | 388 | 660 | IPR001245 | GO:0004672|GO:0006468 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cme01g02755 | Cme-Chr1:34670615 | Cme04g01519 | Cme-Chr4:21789300 | 0 | dispersed | |
Cme01g02755 | Cme-Chr1:34670615 | Cme08g00325 | Cme-Chr8:2068138 | 3.76E-144 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
64640 | PF07714 | PK_Tyr_Ser-Thr | 3.90E-42 | CL0016 | Cme | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cme01g02755 | - | - | csv:101213107 | 1190.64 |