Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme01g02759 ATGAAAGAGACCGACGCCATGGAACAACCCATCGCCGCCGGCGCCGGAATCTCCAATTCCAGCGACCTCAAAAAAAACAAAAAAGCTTCAAAGAAGCTTCTAATCTTAACCCTTTCTTCCACTCTCCTCATCGTCGGTGCCGTCATCGGCATCGTTGCCGGAACAACAAAATCGTCGAAAGACTCCGGCAAATCCCACGCCATCGTGAAGAGTACGTGCAGCAGCACGCTGTATCCTGATATGTGCTATTCTGCAATTTCGAAAAGTGAAGGGGCAATGTTGAAAGTGAAGAGTCAAAAGGATGTGATTGAAGTTTCGATTAATATTACGGTGAAAGCTGTGGAGGAAAATTATTTTAGAGTGAAGAAATTGTGTGGGTTGAAGAACATTAGTCATAGAGAGAAAATTGCTCTCCATGATTGTCTTGAGACCATTGATGAAACGCTTGATGAACTTCATAAAGCTATTGTGGATCTTAATGAATACCCAAATAAAAAGTCTCTTAACCAACATGCTGATGATCTCAAGACCTTGCTTAGTTCCGCTATTACTAATCAGGAAACGTGTCTCGATGGATTCTCCCACGACAATGCGGACAAAACCCTACGGGACAAGTTGAAAGCGGGGCAAATGGAAGTGGAACACATGTGCAGCAATGCGTTAGCCATGATCAAGAACATGACGGACACAGACATAGCCAATTACGAGGCTAAAATGGGAATAACCAAAAATAGAAAACTCATGGCGGAGGAGGAAGACAACAACAATAACGACGAAATCCAGTGGCCGGAGTGGCTTTCAGCCGGTGACCGACGATTACTGCAGTCGTCGTCCGTGACGCCGAATGTGGTGGTGGCGGCGGACGGTAGTGGAAACTTTCGAACGGTGGCAGCCGCCGTGGCGGCGGCGCCGGAGAAAAGTAGTAAGAGATATGTGATAAGAATTAAAGCTGGGGTTTATAGAGAGAATGTGGAAGTGCCGAAGAAGAAGACGAATATTATGTTTATGGGAGATGGAAGACGGAACACCATAATTACCGGTAGCCGGAATGTGGTCGACGGCAGCACCACTTTTAAGTCGGCGACCGTGGCTGCGGTAGGTGAAGGATTTTTAGCGCGTGATATCACGTTCCAAAACACCGCTGGTCCATCAAAGCACCAAGCGGTGGCTCTCCGTGTCGGAGCAGATCTCTCAGCCTTCTACCAATGCGACATGTTAGCTTACCAAGACACTCTCTACGTCCATTCCAACCGTCAATTCTACATCAACTGTCTCGTCTCCGGCACCGTCGATTTCATTTTCGGCAACGCCGCTGCCATTTTCCAAGACTGTGACATTCACGCTCGCAAACCAAATTCCGGTCAGAAAAACATGGTCACGGCTCAAGGTCGGTCCGACCCGAACCAAAACACCGGTATCGTTATCCAAAAATCACGAATCGGAGCAACGTCAGATCTCCGCCCGGTCCAGAAGAGTTTCCCGACTTTTCTAGGAAGGCCGTGGAAGGAATACTCTAGAACCGTGATTATGCAGTGTTCGATTAGCGACGTCATTGACCCGAAGGGATGGCATGAGTGGAGCGGTAGTTTTGCGCTTAACACGTTGTTTTATGGTGAGTATCAAAATACTGGACCGGGGGCTTCGACCGGAGGGAGGGTGACGTGGAAGGGGTTTAGGGTGATTAGGAGTGCCACGGAGGCGGAAGGTTTTACCGCGGGTAAATTTATTGGCGGTGGGAGTTGGTTGCGCTCTACGGGCTTTCCTTTCTCTTTAGGATTGTGA 1782 48.43 MKETDAMEQPIAAGAGISNSSDLKKNKKASKKLLILTLSSTLLIVGAVIGIVAGTTKSSKDSGKSHAIVKSTCSSTLYPDMCYSAISKSEGAMLKVKSQKDVIEVSINITVKAVEENYFRVKKLCGLKNISHREKIALHDCLETIDETLDELHKAIVDLNEYPNKKSLNQHADDLKTLLSSAITNQETCLDGFSHDNADKTLRDKLKAGQMEVEHMCSNALAMIKNMTDTDIANYEAKMGITKNRKLMAEEEDNNNNDEIQWPEWLSAGDRRLLQSSSVTPNVVVAADGSGNFRTVAAAVAAAPEKSSKRYVIRIKAGVYRENVEVPKKKTNIMFMGDGRRNTIITGSRNVVDGSTTFKSATVAAVGEGFLARDITFQNTAGPSKHQAVALRVGADLSAFYQCDMLAYQDTLYVHSNRQFYINCLVSGTVDFIFGNAAAIFQDCDIHARKPNSGQKNMVTAQGRSDPNQNTGIVIQKSRIGATSDLRPVQKSFPTFLGRPWKEYSRTVIMQCSISDVIDPKGWHEWSGSFALNTLFYGEYQNTGPGASTGGRVTWKGFRVIRSATEAEGFTAGKFIGGGSWLRSTGFPFSLGL 593
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 34704512 34708681 + MELO3C024306.2.1 Cme01g02759 319735
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme01g02759 593 Pfam Plant invertase/pectin methylesterase inhibitor 68 223 IPR006501 GO:0004857
Cme01g02759 593 SUPERFAMILY Pectin lyase-like 279 592 IPR011050 -
Cme01g02759 593 ProSitePatterns Pectinesterase signature 2. 426 435 IPR033131 -
Cme01g02759 593 Pfam Pectinesterase 282 578 IPR000070 GO:0030599|GO:0042545
Cme01g02759 593 SMART PMEI_2 64 223 IPR006501 GO:0004857
Cme01g02759 593 PANTHER PECTINESTERASE 30 592 - -
Cme01g02759 593 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 68 228 IPR035513 -
Cme01g02759 593 PANTHER PECTINESTERASE 30 592 - -
Cme01g02759 593 TIGRFAM PME_inhib: pectinesterase inhibitor domain 42 227 IPR006501 GO:0004857
Cme01g02759 593 ProSitePatterns Pectinesterase signature 1. 307 326 IPR018040 -
Cme01g02759 593 Gene3D - 276 593 IPR012334 -
Cme01g02759 593 CDD PMEI-like_3 71 228 - -
Cme01g02759 593 Gene3D Invertase/pectin methylesterase inhibitor family protein 64 228 IPR035513 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cme01g02759 Cme04g01402 CCT
Cme01g02759 Cme04g01402 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme01g02759 Cme-Chr1:34704512 Cme09g01983 Cme-Chr9:23683621 1.31E-162 dispersed
Cme09g01369 Cme-Chr9:18920596 Cme01g02759 Cme-Chr1:34704512 4.16E-144 dispersed
Cme04g01402 Cme-Chr4:19874958 Cme01g02759 Cme-Chr1:34704512 0 transposed
Cme08g00385 Cme-Chr8:2391384 Cme01g02759 Cme-Chr1:34704512 2.86E-152 transposed
Cme01g02759 Cme-Chr1:34704512 Cme02g00332 Cme-Chr2:2719860 1.48E-15 wgd
Cme01g02759 Cme-Chr1:34704512 Cme04g01396 Cme-Chr4:19793938 2.29E-135 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme01g02759 K01051 - csv:101212388 1085.48