Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme01g02823 ATGGATGGAGGTGGAGCAGTGCACAATCGCTCAGTTGAAGATGTTTTCAGTGATTTTAGAGGACGGAGAAATGGCGTCATCAAAGCGCTCACCGTAGATGTTGAAGAGTTCTATCAACAATGTGATCCTGAGAAGGAAAATCTATGCTTGTATGGGTTTCCAAATGAAGTATGGGAAGTTAATCTACCTGCTGAAGAAGTACCTCCAGAACTTCCAGAGCCAGCACTGGGTATTAATTTTGCAAGAGATGGCATGCAAGAAAGGGATTGGTTGGCTTTGGTTGCTGTACATAGTGATTCATGGTTGCTCTCTGTTGCCTACTATTTTGGTGCGAGATTTGGATTTGATAAATCTGATAGGAGGCGACTATTTAATATGATAAATGATTTGCCAACTGTATTTGAAGTGGTCACCGGTATTGCAAAGAAACAGGTTAAGGAAAAATCATCAAGTGCTAATGGTAGCAAATCCAAGTCAAGTTTTAAATCGAATTTTCAGAGGGAAGCTGACGCGCAAGGAATGTACGCAAGGCAGTCGCAGGCACGGGAAGAGGTAGAGACGTTGTATGAAGAAGATGAAGACGAGCACGGCGACACCTTATGTGGGGCATGCGGTGAGAATTATGCTTCAGATGAATTCTGGATTTGCTGTGATATTTGTGAGAAATGGTTCCACGGGAAGTGTGTTAGAATAACTCCCGCAAAAGCCGAGCACATTAAGCAGTACAAATGCCCATCCTGCAGCAACAAGAGAAGCCGCATTTAA 765 43.27 MDGGGAVHNRSVEDVFSDFRGRRNGVIKALTVDVEEFYQQCDPEKENLCLYGFPNEVWEVNLPAEEVPPELPEPALGINFARDGMQERDWLALVAVHSDSWLLSVAYYFGARFGFDKSDRRRLFNMINDLPTVFEVVTGIAKKQVKEKSSSANGSKSKSSFKSNFQREADAQGMYARQSQAREEVETLYEEDEDEHGDTLCGACGENYASDEFWICCDICEKWFHGKCVRITPAKAEHIKQYKCPSCSNKRSRI 254
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 35186972 35190043 + MELO3C024365.2.1 Cme01g02823 319799

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme01g02823 254 CDD PHD_AL_plant 200 250 IPR044104 -
Cme01g02823 254 Pfam PHD-finger 201 250 IPR019787 -
Cme01g02823 254 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 191 249 IPR013083 -
Cme01g02823 254 SMART PHD_3 200 248 IPR001965 -
Cme01g02823 254 SUPERFAMILY FYVE/PHD zinc finger 190 252 IPR011011 -
Cme01g02823 254 ProSitePatterns Zinc finger PHD-type signature. 201 247 IPR019786 -
Cme01g02823 254 ProSiteProfiles Zinc finger PHD-type profile. 198 250 IPR019787 -
Cme01g02823 254 Pfam Alfin 11 139 IPR021998 GO:0006355|GO:0042393
Cme01g02823 254 PANTHER CPG BINDING PROTEIN 6 253 IPR045104 GO:0006355|GO:0042393
Cme01g02823 254 Coils Coil 175 195 - -
Cme01g02823 254 PANTHER PHD FINGER PROTEIN ALFIN-LIKE 3-LIKE ISOFORM X1 6 253 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme01g02823 - - - csv:101222322 481.87
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme01g01419 Cme-Chr1:18026997 Cme01g02823 Cme-Chr1:35186972 6.53E-32 dispersed
Cme01g02823 Cme-Chr1:35186972 Cme03g01394 Cme-Chr3:23448842 1.05E-122 dispersed
Cme03g00506 Cme-Chr3:7532079 Cme01g02823 Cme-Chr1:35186972 4.51E-15 dispersed
Cme03g01011 Cme-Chr3:19172619 Cme01g02823 Cme-Chr1:35186972 5.73E-26 dispersed
Cme07g01004 Cme-Chr7:11204809 Cme01g02823 Cme-Chr1:35186972 2.72E-15 dispersed
Cme07g01005 Cme-Chr7:11207562 Cme01g02823 Cme-Chr1:35186972 5.79E-13 dispersed
Cme01g02823 Cme-Chr1:35186972 Cme01g02824 Cme-Chr1:35189401 2.18E-36 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi9g122 . . . . . . . . Cmo08g00755 Cmo17g00678 . . . . . Cpe12g00597 Cpe17g00469 . . . . . . . . . . . . . . . . . . Lsi02g02913 Csa07g02370 . Cme01g02823 . . . . . . . . . . . . . Car08g00668 Car17g00661 . . Bhi09g00348 . . . . . . Cla09g00078 Cam09g0081 Cec09g0082 Cco09g0081 Clacu09g0089 . Cre09g0076 . . Chy01g02184 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cme06g02215 . 1 252 Alfin-like Transcription Factor Family AT1G14510 83.7 1.9e-113 405.6
Cme03g01394 . 9 250 Alfin-like Transcription Factor Family AT1G14510 74.4 2.1e-96 349.0
Cme01g02823 . 10 251 Alfin-like Transcription Factor Family AT1G14510 66.5 4.1e-92 334.7
Cme10g01083 . 8 238 Alfin-like Transcription Factor Family AT1G14510 58.9 2.8e-77 285.4
Cme04g02724 . 8 232 Alfin-like Transcription Factor Family AT1G14510 58.3 8.5e-74 273.9
Cme03g01394 . 1 252 Alfin-like Transcription Factor Family AT5G26210 77.2 2.4e-108 388.7
Cme01g02823 . 1 253 Alfin-like Transcription Factor Family AT5G26210 65.1 5.0e-98 354.4
Cme06g02215 . 9 254 Alfin-like Transcription Factor Family AT5G26210 72.8 7.5e-94 340.5
Cme10g01083 . 7 240 Alfin-like Transcription Factor Family AT5G26210 58.3 9.5e-81 297.0
Cme04g02724 . 8 234 Alfin-like Transcription Factor Family AT5G26210 56.5 1.6e-75 279.6
Cme03g01394 . 1 252 Alfin-like Transcription Factor Family AT3G42790 74.0 4.7e-101 364.4
Cme01g02823 . 1 253 Alfin-like Transcription Factor Family AT3G42790 63.8 1.7e-95 345.9
Cme06g02215 . 9 254 Alfin-like Transcription Factor Family AT3G42790 72.0 2.2e-90 328.9
Cme10g01083 . 7 240 Alfin-like Transcription Factor Family AT3G42790 59.8 2.4e-81 298.9
Cme04g02724 . 8 234 Alfin-like Transcription Factor Family AT3G42790 56.3 2.2e-74 275.8
Cme10g01083 . 1 240 Alfin-like Transcription Factor Family AT5G05610 78.4 2.3e-113 405.2
Cme04g02724 . 1 235 Alfin-like Transcription Factor Family AT5G05610 72.6 2.0e-101 365.5
Cme03g01394 . 8 252 Alfin-like Transcription Factor Family AT5G05610 65.3 1.9e-91 332.4
Cme01g02823 . 10 253 Alfin-like Transcription Factor Family AT5G05610 62.9 8.1e-90 327.0
Cme06g02215 . 9 254 Alfin-like Transcription Factor Family AT5G05610 62.2 1.1e-83 306.6
Cme10g01083 . 43 240 Alfin-like Transcription Factor Family AT3G11200 81.6 1.1e-96 349.7
Cme04g02724 . 43 235 Alfin-like Transcription Factor Family AT3G11200 74.3 7.1e-83 303.9
Cme03g01394 . 44 252 Alfin-like Transcription Factor Family AT3G11200 67.5 1.9e-75 279.3
Cme01g02823 . 44 253 Alfin-like Transcription Factor Family AT3G11200 64.8 5.4e-75 277.7
Cme06g02215 . 44 254 Alfin-like Transcription Factor Family AT3G11200 63.0 2.6e-69 258.8
Cme06g02215 . 1 161 Alfin-like Transcription Factor Family AT2G02470 85.1 1.4e-76 283.1
Cme03g01394 . 1 158 Alfin-like Transcription Factor Family AT2G02470 77.8 4.3e-65 245.0
Cme01g02823 . 10 160 Alfin-like Transcription Factor Family AT2G02470 77.5 2.3e-63 239.2
Cme10g01083 . 8 155 Alfin-like Transcription Factor Family AT2G02470 67.5 1.3e-53 206.8
Cme04g02724 . 8 130 Alfin-like Transcription Factor Family AT2G02470 70.8 5.6e-49 191.4
Cme03g01394 . 1 167 Alfin-like Transcription Factor Family AT5G20510 78.0 6.4e-74 273.9
Cme01g02823 . 1 162 Alfin-like Transcription Factor Family AT5G20510 75.2 2.4e-68 255.4
Cme06g02215 . 3 172 Alfin-like Transcription Factor Family AT5G20510 71.5 7.6e-67 250.4
Cme10g01083 . 7 157 Alfin-like Transcription Factor Family AT5G20510 62.4 1.4e-52 203.0
Cme04g02724 . 7 152 Alfin-like Transcription Factor Family AT5G20510 59.9 7.9e-48 187.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000240 6 20 6 5 4 4 8 4 4 3 3 4 4 3 3 7 4 8 7 3 3 4 4 4 5 2 5 11 7 4 159
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
40829 PF12165 Alfin 7.20E-68 No_clan Cme TF