Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme01g02823 ATGGATGGAGGTGGAGCAGTGCACAATCGCTCAGTTGAAGATGTTTTCAGTGATTTTAGAGGACGGAGAAATGGCGTCATCAAAGCGCTCACCGTAGATGTTGAAGAGTTCTATCAACAATGTGATCCTGAGAAGGAAAATCTATGCTTGTATGGGTTTCCAAATGAAGTATGGGAAGTTAATCTACCTGCTGAAGAAGTACCTCCAGAACTTCCAGAGCCAGCACTGGGTATTAATTTTGCAAGAGATGGCATGCAAGAAAGGGATTGGTTGGCTTTGGTTGCTGTACATAGTGATTCATGGTTGCTCTCTGTTGCCTACTATTTTGGTGCGAGATTTGGATTTGATAAATCTGATAGGAGGCGACTATTTAATATGATAAATGATTTGCCAACTGTATTTGAAGTGGTCACCGGTATTGCAAAGAAACAGGTTAAGGAAAAATCATCAAGTGCTAATGGTAGCAAATCCAAGTCAAGTTTTAAATCGAATTTTCAGAGGGAAGCTGACGCGCAAGGAATGTACGCAAGGCAGTCGCAGGCACGGGAAGAGGTAGAGACGTTGTATGAAGAAGATGAAGACGAGCACGGCGACACCTTATGTGGGGCATGCGGTGAGAATTATGCTTCAGATGAATTCTGGATTTGCTGTGATATTTGTGAGAAATGGTTCCACGGGAAGTGTGTTAGAATAACTCCCGCAAAAGCCGAGCACATTAAGCAGTACAAATGCCCATCCTGCAGCAACAAGAGAAGCCGCATTTAA 765 43.27 MDGGGAVHNRSVEDVFSDFRGRRNGVIKALTVDVEEFYQQCDPEKENLCLYGFPNEVWEVNLPAEEVPPELPEPALGINFARDGMQERDWLALVAVHSDSWLLSVAYYFGARFGFDKSDRRRLFNMINDLPTVFEVVTGIAKKQVKEKSSSANGSKSKSSFKSNFQREADAQGMYARQSQAREEVETLYEEDEDEHGDTLCGACGENYASDEFWICCDICEKWFHGKCVRITPAKAEHIKQYKCPSCSNKRSRI 254
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 35186972 35190043 + MELO3C024365.2.1 Cme01g02823 319799
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme01g02823 254 CDD PHD_AL_plant 200 250 IPR044104 -
Cme01g02823 254 Pfam PHD-finger 201 250 IPR019787 -
Cme01g02823 254 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 191 249 IPR013083 -
Cme01g02823 254 SMART PHD_3 200 248 IPR001965 -
Cme01g02823 254 SUPERFAMILY FYVE/PHD zinc finger 190 252 IPR011011 -
Cme01g02823 254 ProSitePatterns Zinc finger PHD-type signature. 201 247 IPR019786 -
Cme01g02823 254 ProSiteProfiles Zinc finger PHD-type profile. 198 250 IPR019787 -
Cme01g02823 254 Pfam Alfin 11 139 IPR021998 GO:0006355|GO:0042393
Cme01g02823 254 PANTHER CPG BINDING PROTEIN 6 253 IPR045104 GO:0006355|GO:0042393
Cme01g02823 254 Coils Coil 175 195 - -
Cme01g02823 254 PANTHER PHD FINGER PROTEIN ALFIN-LIKE 3-LIKE ISOFORM X1 6 253 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme01g01419 Cme-Chr1:18026997 Cme01g02823 Cme-Chr1:35186972 6.53E-32 dispersed
Cme01g02823 Cme-Chr1:35186972 Cme03g01394 Cme-Chr3:23448842 1.05E-122 dispersed
Cme03g00506 Cme-Chr3:7532079 Cme01g02823 Cme-Chr1:35186972 4.51E-15 dispersed
Cme03g01011 Cme-Chr3:19172619 Cme01g02823 Cme-Chr1:35186972 5.73E-26 dispersed
Cme07g01004 Cme-Chr7:11204809 Cme01g02823 Cme-Chr1:35186972 2.72E-15 dispersed
Cme07g01005 Cme-Chr7:11207562 Cme01g02823 Cme-Chr1:35186972 5.79E-13 dispersed
Cme01g02823 Cme-Chr1:35186972 Cme01g02824 Cme-Chr1:35189401 2.18E-36 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
40829 PF12165 Alfin 7.20E-68 No_clan Cme TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme01g02823 - - csv:101222322 481.87