Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme01g02830 ATGGCGGAAGAAGAAACCATTGATTCCTATTCCAACAACCATACGATGATTGCGATTAGTAGGGACAAGAACAGTCAATATGCGGTTAAATGGGCTGTGGAACATTTGTTCAATAGGAAGAACACTGGCGATTGTATTCTTATTCATGTTCGGAGTCAGGGCTTGCATCCCCAGGAGGCGGATTCGATTCCTAAGGAGTATCGGCCACCAACTGAAGCCGAGTTGCATCAGTTCTTCCTTCCCTATCGAGGATTTTGCGCAAGGAAAGGGATAGTTGCAAAGGAGATAATCATCCATGATATTGATGTTCCAAATGCACTTATTGACCATGTCAGTAAACACTCCATTAGCAATATTGTTGTGGGTGCTTCCAACCGGAATCCTATTATGAGGAAGTTCAAGAATCCTGATGTTGCGACGTGCTTACTAAAATCAGCCCCAGAATCATGTTCTGTATATGTCATAGCTAGAGGAAAAGTTCATACGAAGAGGTTGAGGAAGCGAAATAAGTCACAAACTGACATGAATGAATCACAAACCGGAACTCCACGTGTCGGCAGTTCTCTATCAAAAACACGAAAATCAGCATATTCTAGTATCTCTGGACTATCTGAAGATAAATACAGGGATAGTTCTGGCACCAGTAATGATTCAATGTCAGGAATTAGTGACTTTTCGGGGCCCCTCAGTTTCAAATCAATTGAAACATCCTTTGAGAACCTAGATTTTTCCCCAAGTTCCTCAGAGACTAGTACGAGGAGCTATGTTTCCTCTAGCACCCCACCTTCAATCGAATCTGAGATGAAAAGGTTGAGGTTTGAACTCAAGCAAATGATGGAAATGTATGACTCGGCTTCCAAGGAAGCTGCGGTAGCAAAACAAAAGGCAAAAGAACTCGAACAGTTGAAGATGGAAAAGGAAGAAGACGACAAAATTGAGCGTGGTAAATCTGCAGATGAGGCTCTAACAGCATTGGCTGAGTTTGAGAAGCAAAAGAACAAGGCTGCAGCAGAAGCAACTTTAGTGGCACAGAAGTTGGCTGAACTAGAGACCCAGAAAAAACAAATTATTACTGAAGAAAAAGCTAGGATTGAGGCAGAGGAGAGGAAGAAAACAATGGAGTTATTTGAACGCAGTAATATTTGTTATAGACGATACAGCATTGATGAGATCGAAGTTGCAACAGATCATTTTAACGAGTCAAACAAGATTGGTGAAGGTGGCTATGGACCTGTTTACCAAGCCTTACTTGATCATACGTCTGTTGCCATTAAGATCTTGAGACCGGATAGATCACATGGGCAGCGACAATTCCAGCAAGAGATTGAGGTTCTAAGCCGGATGAGGCATCCACACATGGTTCTCCTCTTAGGTGCCTGCCCAGAATACGGTTGCCTTGTTTATGAATATATGGAAAATGGGAGTTTGGAAGACCGTCTCTTCCGAAAAGATAACACTCCTCCAATCCCTTGGAGAATCCGTTTCAGGATAGCTTGTGACATTGCCACTGCCCTACTCTTCCTTCATCAAATGAAGCCAGAACCTGTGGTGCATCGTGATCTCAAGCCAGCCAACATTCTCTTAGATCACAACTATGTGAGCAAAATAGGTGACGTGGGTTTGGCCAGGCTAGTTCCACCATCGGTTGCTGATAGTGTCACTCAATATCACATGACTGCTGCAGCTGGAACCTTTTGTTACATTGATCCAGAATATCAACAAACAGGAATGTTGGGTGTGAAATCAGATATTTACTCATTTGGTGTTCTTCTACTTCAGCTCATCACTGCAAGGTCACCGATGGGTCTTTCATATCAGGTTGAGGAGGCTATTGAACATGACAAATTTCCAGAGATACTTGATCCGACAATAACAGATTGGCCAATTGAAGATACTCTTGGACTCGCTCAATTAGCCCTCAAGTGCTGTGAGCTAAGAAAAAGAGACAGGCCCGACCTTCGTACGGTTCTAATGCCAGAACTGTCCAGGTTAAAAAATCTGGGGTTGGGTGAAACACCACCGAAGAGCAAGCTCGCAAATGTCAGCAAAGCACATGATCAACAACCCCCTAACTCGGCTCCAGTCTTGAAGGGATCAGAAAGCGAGGAAGGAATGAGAAACAATCCTAACGTGCCAATGGAAATTCAACGTAGATCTATGTGA 2163 43.37 MAEEETIDSYSNNHTMIAISRDKNSQYAVKWAVEHLFNRKNTGDCILIHVRSQGLHPQEADSIPKEYRPPTEAELHQFFLPYRGFCARKGIVAKEIIIHDIDVPNALIDHVSKHSISNIVVGASNRNPIMRKFKNPDVATCLLKSAPESCSVYVIARGKVHTKRLRKRNKSQTDMNESQTGTPRVGSSLSKTRKSAYSSISGLSEDKYRDSSGTSNDSMSGISDFSGPLSFKSIETSFENLDFSPSSSETSTRSYVSSSTPPSIESEMKRLRFELKQMMEMYDSASKEAAVAKQKAKELEQLKMEKEEDDKIERGKSADEALTALAEFEKQKNKAAAEATLVAQKLAELETQKKQIITEEKARIEAEERKKTMELFERSNICYRRYSIDEIEVATDHFNESNKIGEGGYGPVYQALLDHTSVAIKILRPDRSHGQRQFQQEIEVLSRMRHPHMVLLLGACPEYGCLVYEYMENGSLEDRLFRKDNTPPIPWRIRFRIACDIATALLFLHQMKPEPVVHRDLKPANILLDHNYVSKIGDVGLARLVPPSVADSVTQYHMTAAAGTFCYIDPEYQQTGMLGVKSDIYSFGVLLLQLITARSPMGLSYQVEEAIEHDKFPEILDPTITDWPIEDTLGLAQLALKCCELRKRDRPDLRTVLMPELSRLKNLGLGETPPKSKLANVSKAHDQQPPNSAPVLKGSESEEGMRNNPNVPMEIQRRSM 720
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 35244926 35249399 + MELO3C024374.2.1 Cme01g02830 319806
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme01g02830 720 SMART serkin_6 398 662 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme01g02830 720 Pfam Universal stress protein family 14 147 IPR006016 -
Cme01g02830 720 ProSiteProfiles Protein kinase domain profile. 398 661 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme01g02830 720 Gene3D Phosphorylase Kinase; domain 1 349 470 - -
Cme01g02830 720 Gene3D HUPs 3 157 IPR014729 -
Cme01g02830 720 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 14 155 - -
Cme01g02830 720 Coils Coil 318 369 - -
Cme01g02830 720 Gene3D Transferase(Phosphotransferase) domain 1 471 668 - -
Cme01g02830 720 PANTHER PROTEIN KINASE SUPERFAMILY PROTEIN 14 685 - -
Cme01g02830 720 MobiDBLite consensus disorder prediction 666 720 - -
Cme01g02830 720 PANTHER OS02G0152300 PROTEIN 14 685 - -
Cme01g02830 720 ProSitePatterns Serine/Threonine protein kinases active-site signature. 516 528 IPR008271 GO:0004672|GO:0006468
Cme01g02830 720 MobiDBLite consensus disorder prediction 681 695 - -
Cme01g02830 720 Coils Coil 268 312 - -
Cme01g02830 720 CDD STK_N 17 158 - -
Cme01g02830 720 MobiDBLite consensus disorder prediction 174 222 - -
Cme01g02830 720 MobiDBLite consensus disorder prediction 163 222 - -
Cme01g02830 720 SUPERFAMILY Protein kinase-like (PK-like) 375 657 IPR011009 -
Cme01g02830 720 MobiDBLite consensus disorder prediction 242 264 - -
Cme01g02830 720 Pfam Protein kinase domain 398 656 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme01g02830 Cme-Chr1:35244926 Cme03g01407 Cme-Chr3:23519130 7.72E-179 dispersed
Cme01g02830 Cme-Chr1:35244926 Cme04g00320 Cme-Chr4:2501637 0 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
64642 PF00069 Pkinase 4.00E-42 CL0016 Cme PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme01g02830 - - csv:101209859 1269.99