Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme01g02831 ATGGCGGTCCATTCTTCCAATCGCGATACTGATTCAGAGTTTGATCATAGCTCATCCCAACCGCGTCTTTACAATCCTTACAAGGATCTCCAGGTTCCATATCGAAACTTCCAGCTTCCAACCTCCCCAGAGTTTCTTTTCGATGAAGAAGCTCGCCGCCAGCGTCGATCTTGGGGCGAGAATCTCACCTTCTACACTGGTTGCGGTTACCTCGCCGGTGCAGTCGGAGGCGCTTCTACAGGACTTGTATCCGGTGTTAAATCTTTTGAATCAGGTGATACTATGAAACTCCGGATCAATCGGATCCTGAACTCATCTGGTCATTCAGGGCGTCTCTGGGGAAATCGGCTTGGCGTGATTGGGCTGCTATATGCTGGTTTGGAGAGCGGAATTGAGGCTGTGAGGGATACGGACGATGTCTGGAACTGTGTTGCGGCCGGGCTTGGTACTGGTGCGCTTTATCGTGCAGCAAGAGGGGTAAGATCGGCGGCGGTGGCCGGAGCTGTTGGCGGTGTCGTGGTTGGCTTGGCGGTGACGGGGAGTCATAGTCATAGTTTTATATGGGAAACTGTGATGAGAATGTTGAGGATTGAATTAACTAATTCACTTGATATTTTCTATACGAGTTTAACTCGTGCTTCTTCATTGAGTGATAGTAGAGATTCATGTTTGATGCTTTCATCGCTCGATGGAGTTCACAGGATTTGTGATTCCGTGAGGTGGGTATTGGAGCAGGGTCGTTTTGAATGGTTATGGTATCTCTTTAGCGTGTTGCTACACTTGGTGCGTCAACGCCATGATCCTCGCAGACAGTTTGGTATTTTGAACAAGTTGAGGAGAGGCATTCATCTCATGGAGAATGACAAAAGGCAAAATCAACTGTTTGCTGAGCCACCTGAATATTTCGAACACAAAAGATTCTTTGCAATTAAAAAGAAAGAGAGAAAGAGAGAAAGAGAGAAGAGTACATGCAAGAGATTTGATTTGGAAGGAGCACATAATAGGACAAGAGAAGGTCCAAGGGTTACACTACAAAAACCTAACAGCCTTCACAAATATTTCCCTCTTTCGCTCGCTTCGCTTTGCCCAAACACTCGCCTCCAACTCCACGGATCAGATCCGAAGAGTTTGGCAAACCCTAGCTTCCTCTCTTCAATCTCCATCTTTTTCTTCTCTAACAATCCACAGCATCTTGCTTTGGGAAAAGCTATGGCAGGTTTAGCTCCAGAAGGAACCCAATTTGATTCTCGCCAATACGATGCTAAAATGAATGAGATTCTTTCAGCCGAAGGGCAGGAATTTTTTACCTCATATGATGAAGTTTATGAAAGTTTTGATTCGATGGGGCTGCAAGAGAACCTCCTCAGAGGCATTTATGCCTATGGTTTTGAGAAACCATCTGCAATTCAGCAAAGAGGTATAGTTCCCTTCTGCAAGGGCCTTGATGTGATTCAGCAGGCTCAATCTGGAACTGGAAAAACTGCAACTTTCTGCTCTGGGATACTTCAGCAACTAGATTATGGTCTGGTCCAGTGCCAGGCATTAGTTTTGGCACCGACTAGGGAGCTGGCTCAACAAATTGAGAAGGTTATGAGAGCTCTTGGAGATTATCTTGGAGTTAAGGTTCATGCCTGTGTGGGAGGAACAAGCGTCCGGGAGGATCAACGCATTCTTCAAGCTGGTGTTCATGTAGTAGTTGGAACACCTGGTCGTGTGTTTGACATGTTGAGGAGGCAGTCTCTTCGCCCAGATTGTATTAAGATGTTTGTATTGGATGAAGCTGATGAAATGCTTTCCCGAGGTTTCAAAGATCAGATCTATGATATTTTCCAGCTGTTGCCATCAAAAATTCAAGTTGGGGTGTTCTCAGCCACAATGCCACCAGAAGCATTGGAGATCACTAGAAAGTTCATGAACAAGCCTGTCAGAATCTTGGTAAAACGTGATGAGCTTACTTTGGAAGGTATCAAACAATTTTACGTAAATGTTGATAGGGAAGATTGGAAGCTTGAAACTCTATGTGATCTGTACGAGACTCTGGCTATCACTCAAAGTGTTATCTTTGTTAACACACGTCGCAAGGTCGATTGGCTTACGGACAATATGAGAAGCCGTGATCATACCGTATCGGCCACTCATGGTGACATGGACCAGAACACTCGTGATATAATCATGCGTGAATTTCGCTCTGGGTCGTCTCGTGTTCTTATCACAACTGACTTGTTAGCTCGTGGTATCGATGTCCAGCAAGTGTCCCTTGTCATAAATTATGATTTGCCGACCCAACCCGAAAATTACCTTCATCGAATTGGTCGAAGTGGGCGTTTTGGAAGAAAGGGCGTTGCCATCAATTTTGTTACAAATGATGATGAGAGAATGCTTTTTGATATTCAGAAGTTCTATAATGTGGTCATTGAGGAGCTGCCAGCCAATGTTGCAGATCTCCTATGA 2451 45.08 MAVHSSNRDTDSEFDHSSSQPRLYNPYKDLQVPYRNFQLPTSPEFLFDEEARRQRRSWGENLTFYTGCGYLAGAVGGASTGLVSGVKSFESGDTMKLRINRILNSSGHSGRLWGNRLGVIGLLYAGLESGIEAVRDTDDVWNCVAAGLGTGALYRAARGVRSAAVAGAVGGVVVGLAVTGSHSHSFIWETVMRMLRIELTNSLDIFYTSLTRASSLSDSRDSCLMLSSLDGVHRICDSVRWVLEQGRFEWLWYLFSVLLHLVRQRHDPRRQFGILNKLRRGIHLMENDKRQNQLFAEPPEYFEHKRFFAIKKKERKREREKSTCKRFDLEGAHNRTREGPRVTLQKPNSLHKYFPLSLASLCPNTRLQLHGSDPKSLANPSFLSSISIFFFSNNPQHLALGKAMAGLAPEGTQFDSRQYDAKMNEILSAEGQEFFTSYDEVYESFDSMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDCIKMFVLDEADEMLSRGFKDQIYDIFQLLPSKIQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVDREDWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDNMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTNDDERMLFDIQKFYNVVIEELPANVADLL 816
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 35251061 35257646 + MELO3C024376.2.1 Cme01g02831 319807
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme01g02831 816 MobiDBLite consensus disorder prediction 1 25 - -
Cme01g02831 816 Gene3D - 652 816 IPR027417 -
Cme01g02831 816 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 474 644 IPR014001 -
Cme01g02831 816 Pfam Helicase conserved C-terminal domain 669 777 IPR001650 -
Cme01g02831 816 Gene3D - 433 651 IPR027417 -
Cme01g02831 816 CDD SF2_C_DEAD 656 786 - -
Cme01g02831 816 CDD DEADc_EIF4A 448 645 - -
Cme01g02831 816 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 443 471 IPR014014 GO:0003724
Cme01g02831 816 Pfam DEAD/DEAH box helicase 468 629 IPR011545 GO:0003676|GO:0005524
Cme01g02831 816 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 655 816 IPR001650 -
Cme01g02831 816 SMART ultradead3 462 659 IPR014001 -
Cme01g02831 816 PANTHER EUKARYOTIC INITIATION FACTOR 4A-2 426 816 - -
Cme01g02831 816 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 590 598 IPR000629 -
Cme01g02831 816 Pfam Tim17/Tim22/Tim23/Pmp24 family 64 173 - -
Cme01g02831 816 PANTHER RNA HELICASE 426 816 - -
Cme01g02831 816 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 512 797 IPR027417 -
Cme01g02831 816 SMART helicmild6 696 777 IPR001650 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme01g02831 Cme-Chr1:35251061 Cme06g00191 Cme-Chr6:1170357 9.05E-85 dispersed
Cme02g01431 Cme-Chr2:20764615 Cme01g02831 Cme-Chr1:35251061 4.50E-50 transposed
Cme04g01583 Cme-Chr4:23137930 Cme01g02831 Cme-Chr1:35251061 4.48E-177 transposed
Cme04g02459 Cme-Chr4:31142478 Cme01g02831 Cme-Chr1:35251061 1.34E-61 transposed
Cme09g01075 Cme-Chr9:15146892 Cme01g02831 Cme-Chr1:35251061 1.28E-62 transposed
Cme12g00901 Cme-Chr12:15851063 Cme01g02831 Cme-Chr1:35251061 3.87E-09 transposed
Cme01g02831 Cme-Chr1:35251061 Cme04g01226 Cme-Chr4:17004019 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme01g02831 K03257 - csv:101221456 816.224