Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cme01g02831 | ATGGCGGTCCATTCTTCCAATCGCGATACTGATTCAGAGTTTGATCATAGCTCATCCCAACCGCGTCTTTACAATCCTTACAAGGATCTCCAGGTTCCATATCGAAACTTCCAGCTTCCAACCTCCCCAGAGTTTCTTTTCGATGAAGAAGCTCGCCGCCAGCGTCGATCTTGGGGCGAGAATCTCACCTTCTACACTGGTTGCGGTTACCTCGCCGGTGCAGTCGGAGGCGCTTCTACAGGACTTGTATCCGGTGTTAAATCTTTTGAATCAGGTGATACTATGAAACTCCGGATCAATCGGATCCTGAACTCATCTGGTCATTCAGGGCGTCTCTGGGGAAATCGGCTTGGCGTGATTGGGCTGCTATATGCTGGTTTGGAGAGCGGAATTGAGGCTGTGAGGGATACGGACGATGTCTGGAACTGTGTTGCGGCCGGGCTTGGTACTGGTGCGCTTTATCGTGCAGCAAGAGGGGTAAGATCGGCGGCGGTGGCCGGAGCTGTTGGCGGTGTCGTGGTTGGCTTGGCGGTGACGGGGAGTCATAGTCATAGTTTTATATGGGAAACTGTGATGAGAATGTTGAGGATTGAATTAACTAATTCACTTGATATTTTCTATACGAGTTTAACTCGTGCTTCTTCATTGAGTGATAGTAGAGATTCATGTTTGATGCTTTCATCGCTCGATGGAGTTCACAGGATTTGTGATTCCGTGAGGTGGGTATTGGAGCAGGGTCGTTTTGAATGGTTATGGTATCTCTTTAGCGTGTTGCTACACTTGGTGCGTCAACGCCATGATCCTCGCAGACAGTTTGGTATTTTGAACAAGTTGAGGAGAGGCATTCATCTCATGGAGAATGACAAAAGGCAAAATCAACTGTTTGCTGAGCCACCTGAATATTTCGAACACAAAAGATTCTTTGCAATTAAAAAGAAAGAGAGAAAGAGAGAAAGAGAGAAGAGTACATGCAAGAGATTTGATTTGGAAGGAGCACATAATAGGACAAGAGAAGGTCCAAGGGTTACACTACAAAAACCTAACAGCCTTCACAAATATTTCCCTCTTTCGCTCGCTTCGCTTTGCCCAAACACTCGCCTCCAACTCCACGGATCAGATCCGAAGAGTTTGGCAAACCCTAGCTTCCTCTCTTCAATCTCCATCTTTTTCTTCTCTAACAATCCACAGCATCTTGCTTTGGGAAAAGCTATGGCAGGTTTAGCTCCAGAAGGAACCCAATTTGATTCTCGCCAATACGATGCTAAAATGAATGAGATTCTTTCAGCCGAAGGGCAGGAATTTTTTACCTCATATGATGAAGTTTATGAAAGTTTTGATTCGATGGGGCTGCAAGAGAACCTCCTCAGAGGCATTTATGCCTATGGTTTTGAGAAACCATCTGCAATTCAGCAAAGAGGTATAGTTCCCTTCTGCAAGGGCCTTGATGTGATTCAGCAGGCTCAATCTGGAACTGGAAAAACTGCAACTTTCTGCTCTGGGATACTTCAGCAACTAGATTATGGTCTGGTCCAGTGCCAGGCATTAGTTTTGGCACCGACTAGGGAGCTGGCTCAACAAATTGAGAAGGTTATGAGAGCTCTTGGAGATTATCTTGGAGTTAAGGTTCATGCCTGTGTGGGAGGAACAAGCGTCCGGGAGGATCAACGCATTCTTCAAGCTGGTGTTCATGTAGTAGTTGGAACACCTGGTCGTGTGTTTGACATGTTGAGGAGGCAGTCTCTTCGCCCAGATTGTATTAAGATGTTTGTATTGGATGAAGCTGATGAAATGCTTTCCCGAGGTTTCAAAGATCAGATCTATGATATTTTCCAGCTGTTGCCATCAAAAATTCAAGTTGGGGTGTTCTCAGCCACAATGCCACCAGAAGCATTGGAGATCACTAGAAAGTTCATGAACAAGCCTGTCAGAATCTTGGTAAAACGTGATGAGCTTACTTTGGAAGGTATCAAACAATTTTACGTAAATGTTGATAGGGAAGATTGGAAGCTTGAAACTCTATGTGATCTGTACGAGACTCTGGCTATCACTCAAAGTGTTATCTTTGTTAACACACGTCGCAAGGTCGATTGGCTTACGGACAATATGAGAAGCCGTGATCATACCGTATCGGCCACTCATGGTGACATGGACCAGAACACTCGTGATATAATCATGCGTGAATTTCGCTCTGGGTCGTCTCGTGTTCTTATCACAACTGACTTGTTAGCTCGTGGTATCGATGTCCAGCAAGTGTCCCTTGTCATAAATTATGATTTGCCGACCCAACCCGAAAATTACCTTCATCGAATTGGTCGAAGTGGGCGTTTTGGAAGAAAGGGCGTTGCCATCAATTTTGTTACAAATGATGATGAGAGAATGCTTTTTGATATTCAGAAGTTCTATAATGTGGTCATTGAGGAGCTGCCAGCCAATGTTGCAGATCTCCTATGA | 2451 | 45.08 | MAVHSSNRDTDSEFDHSSSQPRLYNPYKDLQVPYRNFQLPTSPEFLFDEEARRQRRSWGENLTFYTGCGYLAGAVGGASTGLVSGVKSFESGDTMKLRINRILNSSGHSGRLWGNRLGVIGLLYAGLESGIEAVRDTDDVWNCVAAGLGTGALYRAARGVRSAAVAGAVGGVVVGLAVTGSHSHSFIWETVMRMLRIELTNSLDIFYTSLTRASSLSDSRDSCLMLSSLDGVHRICDSVRWVLEQGRFEWLWYLFSVLLHLVRQRHDPRRQFGILNKLRRGIHLMENDKRQNQLFAEPPEYFEHKRFFAIKKKERKREREKSTCKRFDLEGAHNRTREGPRVTLQKPNSLHKYFPLSLASLCPNTRLQLHGSDPKSLANPSFLSSISIFFFSNNPQHLALGKAMAGLAPEGTQFDSRQYDAKMNEILSAEGQEFFTSYDEVYESFDSMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDCIKMFVLDEADEMLSRGFKDQIYDIFQLLPSKIQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVDREDWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDNMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTNDDERMLFDIQKFYNVVIEELPANVADLL | 816 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 35251061 | 35257646 | + | MELO3C024376.2.1 | Cme01g02831 | 319807 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cme01g02831 | 816 | MobiDBLite | consensus disorder prediction | 1 | 25 | - | - | |
Cme01g02831 | 816 | Gene3D | - | 652 | 816 | IPR027417 | - | |
Cme01g02831 | 816 | ProSiteProfiles | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 474 | 644 | IPR014001 | - | |
Cme01g02831 | 816 | Pfam | Helicase conserved C-terminal domain | 669 | 777 | IPR001650 | - | |
Cme01g02831 | 816 | Gene3D | - | 433 | 651 | IPR027417 | - | |
Cme01g02831 | 816 | CDD | SF2_C_DEAD | 656 | 786 | - | - | |
Cme01g02831 | 816 | CDD | DEADc_EIF4A | 448 | 645 | - | - | |
Cme01g02831 | 816 | ProSiteProfiles | DEAD-box RNA helicase Q motif profile. | 443 | 471 | IPR014014 | GO:0003724 | |
Cme01g02831 | 816 | Pfam | DEAD/DEAH box helicase | 468 | 629 | IPR011545 | GO:0003676|GO:0005524 | |
Cme01g02831 | 816 | ProSiteProfiles | Superfamilies 1 and 2 helicase C-terminal domain profile. | 655 | 816 | IPR001650 | - | |
Cme01g02831 | 816 | SMART | ultradead3 | 462 | 659 | IPR014001 | - | |
Cme01g02831 | 816 | PANTHER | EUKARYOTIC INITIATION FACTOR 4A-2 | 426 | 816 | - | - | |
Cme01g02831 | 816 | ProSitePatterns | DEAD-box subfamily ATP-dependent helicases signature. | 590 | 598 | IPR000629 | - | |
Cme01g02831 | 816 | Pfam | Tim17/Tim22/Tim23/Pmp24 family | 64 | 173 | - | - | |
Cme01g02831 | 816 | PANTHER | RNA HELICASE | 426 | 816 | - | - | |
Cme01g02831 | 816 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 512 | 797 | IPR027417 | - | |
Cme01g02831 | 816 | SMART | helicmild6 | 696 | 777 | IPR001650 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cme01g02831 | Cme-Chr1:35251061 | Cme06g00191 | Cme-Chr6:1170357 | 9.05E-85 | dispersed | |
Cme02g01431 | Cme-Chr2:20764615 | Cme01g02831 | Cme-Chr1:35251061 | 4.50E-50 | transposed | |
Cme04g01583 | Cme-Chr4:23137930 | Cme01g02831 | Cme-Chr1:35251061 | 4.48E-177 | transposed | |
Cme04g02459 | Cme-Chr4:31142478 | Cme01g02831 | Cme-Chr1:35251061 | 1.34E-61 | transposed | |
Cme09g01075 | Cme-Chr9:15146892 | Cme01g02831 | Cme-Chr1:35251061 | 1.28E-62 | transposed | |
Cme12g00901 | Cme-Chr12:15851063 | Cme01g02831 | Cme-Chr1:35251061 | 3.87E-09 | transposed | |
Cme01g02831 | Cme-Chr1:35251061 | Cme04g01226 | Cme-Chr4:17004019 | 0 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cme01g02831 | K03257 | - | csv:101221456 | 816.224 |