Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme01g02833 ATGAAGATCGAGTCGACGAGACGGGGAAGGATAAGGGAGCGGATCCGCCGAAGCCATCTTTATACGTTTGCTTGTCTCCGGGCAGACAGCGCACGGGAGGTTGACGATTCAAATCCTTTAACAGGACCTGGCTTCTCACGAATTGTATGTTGTAATCAGCCTCAAACCCATGAGAGAAAGCCATTGAAATACTGCTCGAATTACATATCCACGACCAAGTATAATGTTCTTTCTTTCGTGCCTAAGGCTCTCTTCGAGCAATTCCGAAGGGTTGCCAATTTGTACTTTCTTTTAGCTGCGTTGTTATCGCTCACACCAGTTGCCCCATTTTCTGCCGTGAGCATGATTGCTCCTTTGGTATTTGTTGTTGGGCTCAGTATGGCTAAAGAAGCTCTTGAGGACTGGCGTCGATTTGTGCAGGATATGAAGGTTAACCTCAGGAAAGTGAGTGTCCACAAAGGGGAAGGTGTTTTTGGTTATAGACCATGGCATAAGATCCGAGTAGGAGATATAGTGAAAGTAGAGAAGGATCAGTTCTTTCCAGCCGATCTACTCCTCTTGTCGTCGTGCTATGAGGATGGTATATGTTATGTGGAAACGATGAATTTGGATGGTGAAACCAATCTCAAAGTAAAGAGAGCTTTGGAAGTAACCTTACCATTGGATGATGATGCAACTTTCAAAGATTTTTCTGGAAAAATTTACTGTGAAGATCCAAACCCAAACCTTTACACCTTTGTAGGTAACTTTGAGTATGATCGGCAGATTTATCCTCTTGATCCTAATCAGATTCTCCTTAGAGATTCGAAATTGAGGAATACAGCTTATGCCTATGGGGTGGTGATATTTACTGGACATGATAGCAAAGTCATGCAGAATGCTACAAAATCTCCTTCGAAAAGAAGTAGAATAGAGAGAAAAATGGACAAAATTATTTACATCCTTTTTACTCTACTTATACTGATCTCATCAATAAGCTCAATAGGTTTTGCTGTGAAAACAAAGTACCAAATGACAGACTGGTGGTATTTACGAACTACTGGTGATGACCATGATCCACTGTACAACCCTCGTAAGCCAACCTTATCAGGGCTCATACATTTAATCACTGCTCTTATACTTTATGGATATTTGATACCCATCTCATTATATGTTTCCATCGAAGTTGTTAAGGTTCTGCAAGCTTCCTTCATTAACCAAGATATTAACATGTACTGTGAGGAGACTGCCAATCCAGCTCGAGCTAGAACTTCCAATTTGAATGAGGAATTGGGTCAGGTAGACACAATCCTATCTGACAAAACAGGCACTTTGACTTGCAATCAGATGGACTTTCTGAAATGTTCCATTGCTGGCACTGCGTATGGTGTTAAATCTAGTGAGGTTGAACTTGCAGCTGCAAGGCAGATGGCATATGACTTCGAGGAGCAGGACGGAGAATATCCCGATGTCCATGGACAAAAGAATAGCCAGCAGCCTTCAATGCCACATAGCAGATTAGGTTCGGAGATTGAGCTGGAGACTGTTGTTACTTCAACTGATGGAAAGGATCAGAAGCCTGCCATAAAATATTTTAGTTTTGAGGACAGCCGCCTGACAGGTGGAAACTGGTTGAATGAGCCTAATCATGACGTTCTTTTATTATTCTTCCGTATTTTAGCAATTTGTCACACTGCAATTCCTGAGCTGAATGAGGAGACTGGCGTTTATACATATGAGGCAGAGTCCCCGGATGAAGGTGCTTTTCTTGTTGCAGCAAGAGAATTTGGTTTTGAATTTTGTAAGAGAACACAGTCAACCCTGGTTGTCCGTGAAAGATATCCTTCACCTGATCAAGTAGTTGAAAGGGAATACAAAATTTTGAATCTATTGGATTTCACAAGCAAGAGAAAGAGAATGTCTGTAATTGTTAAGGACGAGGAGGGCCAGATTCTTCTTCTCTGCAAAGGTGCCGATAGCATCATCTTCGATCGTCTATCAAAGAATGGAAGAATGTATGAGGAAGCAACCACAAGGCATTTGAATGAATATGGAGAAGCAGGGCTGCGAACTCTGGCACTTGCTTATAGGAAGCTTGAGGAAGCCGAATATAATGCTTGGAACAATGAGTTTCAGAAGGCTAAGACGTCCATCGGAGGAGATAGAGATGCAATGCTTGAGCGAGTATCCGACCTCATGGAGCGAGAATTAGTCCTTGTTGGTGCTACTGCTGTGGAGGACAAGTTACAGAATGGGGTGCCTCAATGCATAGACAAACTTGCACAAGCTGGTCTTAAGATCTGGGTTCTGACAGGAGATAAGATGGAAACTGCTATCAACATAGGATATGCATGCAGTTTACTACGACAGGGAATGAAGCGGATCTGCATATCAACAACCTCAGACTCCTTAGCACAGGATGGGAAAGAGGCCATGAAAGAAAATATTTCGAATCAAATCACCAATGCCTCACAAATGATCAAGCTGGAAAATGATCCTCATGCTGCATTTGCTTTAATCATTGATGGGAAGACTTTAACATATGCTCTTGAGGATGATATGAAGCTTCAATTCCTTGGACTCGCTGTTGATTGTGCATCGGTCATTTGCTGCCGTGTCTCCCCCAAGCAGAAGGCACTGGTAACAAGGTTAGTGAAAGAAGGTACTGGGAAAACTACTTTAGCAATTGGCGATGGTGCAAACGATGTAGGAATGATTCAAGAGGCTGATATTGGTGTCGGTATCAGTGGGGTTGAAGGTATGCAGGCTGTGATGGCTAGTGATTTCTCTATTGCTCAATTTCGGTTTCTTGAAAGGCTTCTGGTAGTCCATGGTCATTGGTGCTACAAGAGGATAGCACAAATGATTTGCTATTTCTTCTATAAGAATATTGCATTTGGATTAACGCTATTCTACTTCGAAGCATATGCTGGATTTTCTGGGCAATCAATTTATGATGATTTCTACATGCTATCATTTAATGTCATACTCACCTCATTGCCTGTAATTTCCCTCGGAGTATTTGAGCAAGATGTCTCTTCTGAGGTGTGCCTACAGTTCCCTGCACTATATCAGCAAGGACCTCGAAACTTGTTCTTTGACTGGCCTCGAATTTTCGGATGGATGGGGAATGCTCTCTACTCATCTCTAGTTACTTTCTTTCTCAATCTCATCATCTTCTATGACCAGGCATTCCGTTCTGGCGGCCAAACTGCAGATATGACTGCTGTAGGAACCACTATGTTTACTTGCATCATATGGGCAGTAAATTGTCAGATTGCTCTCACAATGAGCCATTTCACCTGGATCCAACACCTTCTCGTCTGGGGTAGTATTGCGATGTGGTATTTGTTCATCTTACTCTATGGAATGATCATATCCTCTGGGAATGCGTATAAAATCTTTGTCGAAGCTCTAGGTCCTGCCCCTGTTTACTGGATAGCCACATTTTTAGTAACGATTACCTGTAATCTCCCATATCTTGCTCACATATCCTTCCAGAGAAGCTTCCATCCAATGGATCATCACATTATCCAAGAAATCAAATACTACAGAAAGGATGTTGAAGATACGCACATGTGGACCAGGGAAAGATCAAAAGCAAGGCAAAAGACAAAGATAGGATTCACAGCCAGAGTAGAAGCAAAGATCAGACAGTTAAAAGGAAAGCTGCAAAAGAAGCACTCTTCACTTGGTGTGCCTCCAAATGCTACTGCTACTGCTATATCATGA 3711 42.28 MKIESTRRGRIRERIRRSHLYTFACLRADSAREVDDSNPLTGPGFSRIVCCNQPQTHERKPLKYCSNYISTTKYNVLSFVPKALFEQFRRVANLYFLLAALLSLTPVAPFSAVSMIAPLVFVVGLSMAKEALEDWRRFVQDMKVNLRKVSVHKGEGVFGYRPWHKIRVGDIVKVEKDQFFPADLLLLSSCYEDGICYVETMNLDGETNLKVKRALEVTLPLDDDATFKDFSGKIYCEDPNPNLYTFVGNFEYDRQIYPLDPNQILLRDSKLRNTAYAYGVVIFTGHDSKVMQNATKSPSKRSRIERKMDKIIYILFTLLILISSISSIGFAVKTKYQMTDWWYLRTTGDDHDPLYNPRKPTLSGLIHLITALILYGYLIPISLYVSIEVVKVLQASFINQDINMYCEETANPARARTSNLNEELGQVDTILSDKTGTLTCNQMDFLKCSIAGTAYGVKSSEVELAAARQMAYDFEEQDGEYPDVHGQKNSQQPSMPHSRLGSEIELETVVTSTDGKDQKPAIKYFSFEDSRLTGGNWLNEPNHDVLLLFFRILAICHTAIPELNEETGVYTYEAESPDEGAFLVAAREFGFEFCKRTQSTLVVRERYPSPDQVVEREYKILNLLDFTSKRKRMSVIVKDEEGQILLLCKGADSIIFDRLSKNGRMYEEATTRHLNEYGEAGLRTLALAYRKLEEAEYNAWNNEFQKAKTSIGGDRDAMLERVSDLMERELVLVGATAVEDKLQNGVPQCIDKLAQAGLKIWVLTGDKMETAINIGYACSLLRQGMKRICISTTSDSLAQDGKEAMKENISNQITNASQMIKLENDPHAAFALIIDGKTLTYALEDDMKLQFLGLAVDCASVICCRVSPKQKALVTRLVKEGTGKTTLAIGDGANDVGMIQEADIGVGISGVEGMQAVMASDFSIAQFRFLERLLVVHGHWCYKRIAQMICYFFYKNIAFGLTLFYFEAYAGFSGQSIYDDFYMLSFNVILTSLPVISLGVFEQDVSSEVCLQFPALYQQGPRNLFFDWPRIFGWMGNALYSSLVTFFLNLIIFYDQAFRSGGQTADMTAVGTTMFTCIIWAVNCQIALTMSHFTWIQHLLVWGSIAMWYLFILLYGMIISSGNAYKIFVEALGPAPVYWIATFLVTITCNLPYLAHISFQRSFHPMDHHIIQEIKYYRKDVEDTHMWTRERSKARQKTKIGFTARVEAKIRQLKGKLQKKHSSLGVPPNATATAIS 1236
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 35261203 35266449 - MELO3C024378.2.1 Cme01g02833 319809
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme01g02833 1236 Pfam Phospholipid-translocating P-type ATPase C-terminal 917 1165 IPR032630 -
Cme01g02833 1236 PRINTS P-type cation-transporting ATPase superfamily signature 431 445 - -
Cme01g02833 1236 PRINTS P-type cation-transporting ATPase superfamily signature 889 908 - -
Cme01g02833 1236 SFLD Haloacid Dehalogenase 415 940 - -
Cme01g02833 1236 PANTHER PROBABLE PHOSPHOLIPID-TRANSPORTING ATPASE 8 1227 - -
Cme01g02833 1236 SUPERFAMILY HAD-like 419 933 IPR036412 -
Cme01g02833 1236 SUPERFAMILY Calcium ATPase, transmembrane domain M 58 1161 IPR023298 -
Cme01g02833 1236 Gene3D - 729 929 IPR023214 -
Cme01g02833 1236 CDD P-type_ATPase_APLT_Dnf-like 66 1048 - -
Cme01g02833 1236 SFLD p-type atpase 415 940 IPR044492 -
Cme01g02833 1236 Gene3D - 125 297 - -
Cme01g02833 1236 SUPERFAMILY Calcium ATPase, transduction domain A 155 294 IPR008250 -
Cme01g02833 1236 ProSitePatterns E1-E2 ATPases phosphorylation site. 433 439 IPR018303 -
Cme01g02833 1236 Gene3D - 595 708 IPR023299 GO:0000166
Cme01g02833 1236 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 532 696 IPR023299 GO:0000166
Cme01g02833 1236 Pfam Cation transport ATPase (P-type) 555 660 - -
Cme01g02833 1236 Pfam Phospholipid-translocating ATPase N-terminal 50 116 IPR032631 -
Cme01g02833 1236 MobiDBLite consensus disorder prediction 479 499 - -
Cme01g02833 1236 PANTHER PHOSPHOLIPID-TRANSPORTING ATPASE 8 1227 - -
Cme01g02833 1236 MobiDBLite consensus disorder prediction 484 498 - -
Cme01g02833 1236 TIGRFAM ATPase-Plipid: phospholipid-translocating P-type ATPase, flippase 64 1173 IPR006539 GO:0000287|GO:0005524|GO:0015914|GO:0016021|GO:0140326
Cme01g02833 1236 Gene3D - 441 462 IPR023299 GO:0000166
Cme01g02833 1236 Gene3D - 428 440 IPR023214 -
Cme01g02833 1236 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 861 970 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme01g02833 Cme-Chr1:35261203 Cme05g00789 Cme-Chr5:9872982 0 dispersed
Cme01g02833 Cme-Chr1:35261203 Cme10g00310 Cme-Chr10:2035551 0 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme01g02833 K01530 - csv:101221220 2394.77