Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme01g02839 ATGATGATGAAAGGCAATTTTTTGTCTCAACAACAACAACAACAACAACAACAAATTGTAGTGATGGATGAAAATTTGTCGAATTTGACTTCTGCATCTGGTGAAGCTACTGTTAGTGTTTCTTCTGCCAATAAATCTGAATTTTCCAATCAATATTTTGCTCCTCAAACAACCCAACAACAGCCTCCTCCTCCTCCTAAGAAGAAGCGCAACCTTCCAGGAAATCCCGACCCAGATGCGGAAGTGATAGCGTTATCGCCGAAGACATTGATGGCAACGAATAGATTTGTGTGTGAGATATGCAACAAAGGGTTTCAGAGAGATCAGAATCTTCAACTACATAGAAGAGGACACAATTTGCCATGGAAATTAAAGCAAAGATCAAACAAAGAGATAATAAAGAAGAAAGTATATGTTTGTCCAGAAGTGAGTTGTGTTCATCATGATCCATCAAGAGCACTTGGAGATTTAACAGGAATTAAGAAGCACTTTTGTAGAAAGCATGGTGAAAAGAAATGGAAATGTGATAAATGCTCTAAGAAATATGCTGTTCAATCTGATTGGAAAGCTCATTCCAAGATCTGTGGCACTAAAGAGTATAGATGTGACTGTGGTACTCTCTTTTCAAGGAGAGATAGTTTCATTACACATAGAGCTTTTTGTGATGCATTAGCAGATGAAAGTGCAAGATCAGCAATGGCATTGAACCCTCTTCTCTCATCTTACAACCGCAATAACAACAACAACAATAGTAATTCACAAGATCATCAATTTTGTAATAATCTTGCTCTCAAACGAGATTTCGACAACAGTAGCAACAGCAACAACAACAACAACAATAACCACCATTTGAGAGTGGAAATTCCACCGTGGCTACAACCATCATCAGATCATCTGATGGTGGGGAGTGGCGGCCAAGACGAAAACAATGATGAAACTGTAAACCCTAACCCTAGTAGTAGTAGTAGTAGGGGGTGCGGGGCCAGCAGGAGAAGTGTTGGTGTTGGTGTTGGTACTCCTAATAATCCTAATCCTTGTGAGTTATACCAATCGTCTTCACATATATCAGCGACTGCACTGCTGCAGAAGGCAGCCCAGATGGGTGCGACCATGAGTAGTACCACTACCACGAGTGGCTCTTTCCCAAGGCCCCACAACCTTCTTCACGTGTCTACAGGTAATTTTGGAGAGATGGGATTATGGTCAGGTGATGTTGAAATTGGTAGAGGAGGAGGAGGAGGAGCTGTGAGTTGTAGCAGTAGTAGTTGTACTGATTACGGGAATAAAGCTGCAGCTGCTTCTGCTTCTGCTTCTGCTTCTGCTTCGGCTTCCGCTTCGGCTTCCACCACTTTTCTTCACGACATTATTAATAATTCCCTATCTTCTCCTTCTCCATCTCATCCTCCTTTCCTCCAACAACATAATTCCTCCTTCCCCGACACGGCTTTCGCGGCATTGCATCATCCTCCTCCTCCTCATCATCATCATCATACCGTCATCCCCACCACCGCCCCGGCTTCGGGGGGTCGAAACGACGGTTTAACGAGAGATTTCTTGGGACTTCGCCCTCTTTCGCATGGAGATATTCTAAGCCTTACTGGTTTTGGAAATTGTATTGTTCCTAATTCCTCCAATCTTCACCCTCAAATCCAGAAGCCATGGCAGGGTTAG 1671 43.09 MMMKGNFLSQQQQQQQQQIVVMDENLSNLTSASGEATVSVSSANKSEFSNQYFAPQTTQQQPPPPPKKKRNLPGNPDPDAEVIALSPKTLMATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLKQRSNKEIIKKKVYVCPEVSCVHHDPSRALGDLTGIKKHFCRKHGEKKWKCDKCSKKYAVQSDWKAHSKICGTKEYRCDCGTLFSRRDSFITHRAFCDALADESARSAMALNPLLSSYNRNNNNNNSNSQDHQFCNNLALKRDFDNSSNSNNNNNNNHHLRVEIPPWLQPSSDHLMVGSGGQDENNDETVNPNPSSSSSRGCGASRRSVGVGVGTPNNPNPCELYQSSSHISATALLQKAAQMGATMSSTTTTSGSFPRPHNLLHVSTGNFGEMGLWSGDVEIGRGGGGGAVSCSSSSCTDYGNKAAAASASASASASASASASTTFLHDIINNSLSSPSPSHPPFLQQHNSSFPDTAFAALHHPPPPHHHHHTVIPTTAPASGGRNDGLTRDFLGLRPLSHGDILSLTGFGNCIVPNSSNLHPQIQKPWQG 556
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 35310736 35314259 + MELO3C024385.2.1 Cme01g02839 319815
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme01g02839 556 MobiDBLite consensus disorder prediction 481 511 - -
Cme01g02839 556 ProSiteProfiles Zinc finger C2H2 type domain profile. 96 118 IPR013087 -
Cme01g02839 556 SMART c2h2final6 173 193 IPR013087 -
Cme01g02839 556 SMART c2h2final6 138 168 IPR013087 -
Cme01g02839 556 SMART c2h2final6 96 118 IPR013087 -
Cme01g02839 556 Gene3D Classic Zinc Finger 151 230 - -
Cme01g02839 556 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 28 536 - -
Cme01g02839 556 ProSitePatterns Zinc finger C2H2 type domain signature. 98 118 IPR013087 -
Cme01g02839 556 MobiDBLite consensus disorder prediction 299 328 - -
Cme01g02839 556 Gene3D Classic Zinc Finger 75 146 - -
Cme01g02839 556 PANTHER PROTEIN INDETERMINATE-DOMAIN 7 28 536 - -
Cme01g02839 556 MobiDBLite consensus disorder prediction 54 80 - -
Cme01g02839 556 MobiDBLite consensus disorder prediction 293 339 - -
Cme01g02839 556 Pfam Zinc finger, C2H2 type 96 118 IPR013087 -
Cme01g02839 556 SUPERFAMILY beta-beta-alpha zinc fingers 95 193 IPR036236 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme01g02839 Cme-Chr1:35310736 Cme08g00831 Cme-Chr8:5504754 3.36E-114 dispersed
Cme01g02839 Cme-Chr1:35310736 Cme07g00220 Cme-Chr7:1456692 6.06E-100 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
40831 PF00096 zf-C2H2 0.0057 CL0361 Cme TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme01g02839 K25870 - csv:101220200 865.914