Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme01g02877 AAAAGCTCCAGTATACTAAGCTGGGAAGTTAGACTTCGAATTGCAATAGATGCAGCGCAAGGACTGGAGTATCTACATCATGGTTGTAAGCCACCAGTAGTTCACAGAGATGTGAAAACAACAAATATCTTATTGACAGAAAATTTCAATGCCAAGCTTTCAGATTTTGGACTTTCAAAGACTTACCCAACAGATGACAAGTCCTACATGTCCACTGTTATTGTTGGCACTCCAGGTTACCTTGATCCAGAGTACTATACATCAAACAGGCTAACTGAAAAAAGTGATGTGTACGGTTTTGGAGTTTCCTTGATGGAAATAATTAGTTGCAGACCAGTAATTTTGAACACCCCAGACCGAGAAACGAATTACATAGTCAAATGGGTTCACGCCATGGTTTCTCAGGGAGACATCAAGAATATAGTTGACCCAAGAATAAAAGGAGCATATGATAGTAACTCTGTTTGGAAAGCTGTGGAATTAGCCTTGGCCTGTGTATCAGTAGACTCCAATCAAAGGCCAACGATGAATCAAGTAGTGATAGAGTTGAAGGACTGCTTGGCCATGGAGTTGAGTCAGAGGTCGGAAAGCCGTCCAATGGAATCAAAAGACTCCATT 618 41.1 KSSSILSWEVRLRIAIDAAQGLEYLHHGCKPPVVHRDVKTTNILLTENFNAKLSDFGLSKTYPTDDKSYMSTVIVGTPGYLDPEYYTSNRLTEKSDVYGFGVSLMEIISCRPVILNTPDRETNYIVKWVHAMVSQGDIKNIVDPRIKGAYDSNSVWKAVELALACVSVDSNQRPTMNQVVIELKDCLAMELSQRSESRPMESKDSI 206
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 35533652 35539713 - MELO3C027982.2.1 Cme01g02877 319853
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme01g02877 206 PANTHER PUTATIVE-RELATED 1 204 - -
Cme01g02877 206 Pfam Protein kinase domain 13 180 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme01g02877 206 SUPERFAMILY Protein kinase-like (PK-like) 5 182 IPR011009 -
Cme01g02877 206 Gene3D Transferase(Phosphotransferase) domain 1 1 204 - -
Cme01g02877 206 PANTHER OS07G0107800 PROTEIN-RELATED 1 204 - -
Cme01g02877 206 ProSiteProfiles Protein kinase domain profile. 1 187 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme01g02877 206 SMART serkin_6 1 187 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme01g02877 206 ProSitePatterns Serine/Threonine protein kinases active-site signature. 33 45 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme01g02877 Cme-Chr1:35533652 Cme01g02881 Cme-Chr1:35543006 4.91E-97 dispersed
Cme01g02880 Cme-Chr1:35539017 Cme01g02877 Cme-Chr1:35533652 3.13E-68 dispersed
Cme01g02882 Cme-Chr1:35549066 Cme01g02877 Cme-Chr1:35533652 1.94E-67 dispersed
Cme01g02876 Cme-Chr1:35528480 Cme01g02877 Cme-Chr1:35533652 5.88E-96 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
64648 PF00069 Pkinase 3.40E-27 CL0016 Cme PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme01g02877 - - csv:101206446 405.216