Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme01g02881 ATGAAGACAATGGAATTGTCAGTGCTCCATTCTCTCTTTGGTTTACTGCTGTGTAGCCTAACTCTTCTACTTCTTGTTCAAGCCCAGGATCAGTCAGGCTTCATTAGTTTAGACTGTGGAACACCAGAGGGTACGAGTTACACCGAAACAACAACCAAGATTGACTATGTTTCTGATGCACCCTACATAAACAGTGGTGTAAGTCGAAGTGTAGCTTCAGTCTATGGAGATACCTACCAACAGCAAATGAGGAAACTTAGAAGCTTTCCCCAAGGAATTAGAAATTGTTACAATGTAAGCGTTAAAAAGGATACCAAATACTTGATTCGAGCAGGTTTCTTATATGGGAATTATGATGCCCTGAATTCTCTACCGATGTTTGATCTCTATATCGGGAATAGCTTATGGGAGACAATTAACTTCACTAAAGTGGGTATTGACGTTTTCAAAGATCTCATACATATTACCTCCTCAAACAAAGTTCACATCTGTCTGATCAACACAGGAAATGGGGTGCCATTTATCTCAGCCTTAGAATTTAGACCTTTACTGAATGTCACTTATCAAACAGCCGCAGGGTCCTTATCACTGGATTATCGATTGGATGTCGGTTCGACTGAAAATCGAACATACAGGTTCCCTTTTGATGTTTATGATCGGATGTGGTCACCATTTAACTTCAATGCGTGGACACAAGTGAGCACCAATCGAACTGTAGATGAAACGGGTCACAACAATCACCAACCGCCATCCGTTGTAATGCAAACTGCTTCCGCCCGAATAAATGCAAGCGAGCCACTGGAAATTTGGTGGGATACAGAAGATTCATCTCAATATTATGTATTCATCCACGTTGCTGAAGTTGTAGAGCTTCAAGGCAACCAGAGTAGAGGATTCAATATCATGCACAATGGGGATCTTTTTTATGGACCTCTAATTCCAAGTTATTTATCCACGCTGACCATTTTTGGCCATGAACCATTGGATGCAGCGGATAGACATACATTTTCTTTTACTCCAATTGAGAATGCAACGCTTCCTCCCATCGTTAATGCTTTCGAGGTATATATAGTGAAAGATATATCAGAGCTTGAGGCAGACAAAGGAGATGTGGAAGCAATTACCAATATCAAGTCAACCTATGGGGTAAAGAAAGATTGGCAAGGAGATCCATGCGTGCCGATGGGATATCCCTGGAGTGGATTAAATTGTAGCAATGAAGCAGAACCAAGAATCATATCCTTGAACTTATCTGCAAGTGGACTGAACGGTGAAATATCTTCCTATATATCCAGTCTAACCATGTTGCAAACTTTGGACTTGTCAAACAATAATTTGACAGGACACGTGCCTGATTTCCTGTCTAGTTTGTCACACCTCAAAACTCTGAACCTAGGTAACAACAAGCTCTCAGGTCCAATTCCAGCTGAGCTTTTGAAAAGATCCAATGATGGATCACTATCATTAAGTGTGGGAGGCAACCAAAATCTGGAAGGATGTGCATCAGATCCTTGTCCAAAGAATGAGGAGAAAAAGAACAACATCATCATTCCAATTGTAGCATCAATTGGTGGATTCCTAGTTGTCGTCGCAATTGTCGCAATAACCTTTTGGATCATTAAATCTCGAAAGAAACAACAAGGTAAAAATGTTGTCTCAGTGGTGGATAAGTCGGAAACCAACAGTCAGTTAGGTACTTCATTGGAGGTGAGAAGCCGACAATTTACTTATTCTGAGGTGGTGAAAATGACCAACAATTTCAAAAAAGTTCTGGGTAAAGGAGGTTTTGGGGAGGTCTACTATGGTGTCATTGACGAAGTTGAAGTGGCAGTGAAGATGTTGTCTTTATCATCATCACAAGGATATCGGCAATTTCAAGCAGAGGTTACCCTTCTTATGAGAGTTCACCATAGAAACTTGACCAGCCTTGTTGGTTATTTGAATGAAGAAAATCACATTGGCCTCATTTACGAGTACATGGCAAACGGAGATTTGGCTGAACATCTTTCAGAGAGGAGTCTACGTATCATAAGCTGGGAAGATAGACTTCGAATAGCTATGGATGCAGCTCAAGGATTAGAGTACCTGCATTACGGTTGTAAGCCACCCATTGTCCACAGAGATGTGAAAACAACAAACATCTTGTTGACAGATAATTTCCAAGGCAAACTTGCAGATTTTGGTCTTTCCAAAAGCTTCCCCACAGATGGCAACACCCACATGTCCACAGTTGTTGCTGGCACTCCTGGTTATCTTGATCCAGAGTACTACGTATCAAACAGGCTAACAGAGAAAAGCGATGTATACAGCTTTGGGATAGCTCTATTAGAGATAATAAGTTGCAAACCAGTGATATCAAGAACAGGAGATACACCACATATAGCTAAATGGGTTACCTCTCTGATAGCGCAAGGAGATATTCAGAGCATAGTGGACCCAAGATTAGAAGGGCAATATGAAAGAAACTCTGTTTGGAAGACTGTGGAAGTGGCAATGGCTTGTGTAGCGGCAAATTCCAGTAGAAGGCCGACGATGAGCGACGTTGTGGCGGAACTCAAAGATTGCTTAGCTACAGCATTGAGTCGAAAACATGAGAATGGTTCGCTTGAATCAACAAATTTCCCTGAAACGAGGTCCATCTCTATAGGAATCAATGCTTCCGATTCAAGTCCCGTGGCGAGGTGA 2685 41.56 MKTMELSVLHSLFGLLLCSLTLLLLVQAQDQSGFISLDCGTPEGTSYTETTTKIDYVSDAPYINSGVSRSVASVYGDTYQQQMRKLRSFPQGIRNCYNVSVKKDTKYLIRAGFLYGNYDALNSLPMFDLYIGNSLWETINFTKVGIDVFKDLIHITSSNKVHICLINTGNGVPFISALEFRPLLNVTYQTAAGSLSLDYRLDVGSTENRTYRFPFDVYDRMWSPFNFNAWTQVSTNRTVDETGHNNHQPPSVVMQTASARINASEPLEIWWDTEDSSQYYVFIHVAEVVELQGNQSRGFNIMHNGDLFYGPLIPSYLSTLTIFGHEPLDAADRHTFSFTPIENATLPPIVNAFEVYIVKDISELEADKGDVEAITNIKSTYGVKKDWQGDPCVPMGYPWSGLNCSNEAEPRIISLNLSASGLNGEISSYISSLTMLQTLDLSNNNLTGHVPDFLSSLSHLKTLNLGNNKLSGPIPAELLKRSNDGSLSLSVGGNQNLEGCASDPCPKNEEKKNNIIIPIVASIGGFLVVVAIVAITFWIIKSRKKQQGKNVVSVVDKSETNSQLGTSLEVRSRQFTYSEVVKMTNNFKKVLGKGGFGEVYYGVIDEVEVAVKMLSLSSSQGYRQFQAEVTLLMRVHHRNLTSLVGYLNEENHIGLIYEYMANGDLAEHLSERSLRIISWEDRLRIAMDAAQGLEYLHYGCKPPIVHRDVKTTNILLTDNFQGKLADFGLSKSFPTDGNTHMSTVVAGTPGYLDPEYYVSNRLTEKSDVYSFGIALLEIISCKPVISRTGDTPHIAKWVTSLIAQGDIQSIVDPRLEGQYERNSVWKTVEVAMACVAANSSRRPTMSDVVAELKDCLATALSRKHENGSLESTNFPETRSISIGINASDSSPVAR 894
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 35543006 35547858 - MELO3C024423.2.1 Cme01g02881 319857
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme01g02881 894 ProSiteProfiles Leucine-rich repeat profile. 435 457 IPR001611 GO:0005515
Cme01g02881 894 PANTHER PUTATIVE-RELATED 15 894 - -
Cme01g02881 894 SUPERFAMILY Protein kinase-like (PK-like) 562 852 IPR011009 -
Cme01g02881 894 ProSitePatterns Protein kinases ATP-binding region signature. 591 612 IPR017441 GO:0005524
Cme01g02881 894 Pfam Protein tyrosine and serine/threonine kinase 587 852 IPR001245 GO:0004672|GO:0006468
Cme01g02881 894 Gene3D Phosphorylase Kinase; domain 1 572 659 - -
Cme01g02881 894 PRINTS Leucine-rich repeat signature 436 449 - -
Cme01g02881 894 PRINTS Leucine-rich repeat signature 457 470 - -
Cme01g02881 894 Pfam Malectin-like domain 37 357 IPR024788 -
Cme01g02881 894 ProSitePatterns Serine/Threonine protein kinases active-site signature. 704 716 IPR008271 GO:0004672|GO:0006468
Cme01g02881 894 SMART serkin_6 585 856 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme01g02881 894 ProSiteProfiles Protein kinase domain profile. 585 856 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme01g02881 894 PANTHER OS07G0107800 PROTEIN-RELATED 15 894 - -
Cme01g02881 894 Gene3D Transferase(Phosphotransferase) domain 1 660 874 - -
Cme01g02881 894 SUPERFAMILY L domain-like 395 483 - -
Cme01g02881 894 Gene3D Ribonuclease Inhibitor 371 491 IPR032675 -
Cme01g02881 894 Pfam Leucine rich repeat 414 470 IPR001611 GO:0005515
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme01g01754 Cme-Chr1:24605182 Cme01g02881 Cme-Chr1:35543006 2.57E-118 dispersed
Cme01g02871 Cme-Chr1:35505688 Cme01g02881 Cme-Chr1:35543006 0 dispersed
Cme01g02874 Cme-Chr1:35517148 Cme01g02881 Cme-Chr1:35543006 0 dispersed
Cme01g02875 Cme-Chr1:35522641 Cme01g02881 Cme-Chr1:35543006 0 dispersed
Cme01g02877 Cme-Chr1:35533652 Cme01g02881 Cme-Chr1:35543006 4.91E-97 dispersed
Cme01g02879 Cme-Chr1:35538892 Cme01g02881 Cme-Chr1:35543006 0 dispersed
Cme01g02881 Cme-Chr1:35543006 Cme01g02883 Cme-Chr1:35550173 0 dispersed
Cme01g02885 Cme-Chr1:35563004 Cme01g02881 Cme-Chr1:35543006 0 dispersed
Cme04g01161 Cme-Chr4:15889458 Cme01g02881 Cme-Chr1:35543006 0 dispersed
Cme01g02880 Cme-Chr1:35539017 Cme01g02881 Cme-Chr1:35543006 7.44E-42 tandem
Cme01g02881 Cme-Chr1:35543006 Cme01g02882 Cme-Chr1:35549066 6.41E-70 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
64651 PF12819 Malectin_like 2.10E-105 CL0202 Cme PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme01g02881 - - csv:101206211 1651.72