Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme01g02883 ATGGATGTTTCGACATATTTGCTCTTTGCCTTTCTGAGTAGCGTAGCTCTGCTCTATCTTGTTCCAGCTCAAGGTCAATCAGGCTTCATAAGCTTGGATTGTGGGTTGCCACCAAACACAAACTACATTGAACCAACAACAACACTTCAATTTACTTCTGATGCTGCTTATATAAGCAGTGGTAAAAGCAAAAGCTTGTCCTCTACTTATAACGAACTTCTACAGCGACAATATCTTCATGTTAGAAGCTTTCCCCAAGGACGTAGGAATTGCTACAATATAAGTGTAAAAAAGAATACAAAGTATTTGATGCGAGCAAGTTTTTTCTATGGAAATTACGATGGGCTCAACCAACTGCCAAAATTCAATCTCTACTTTGGAGATAGCTTATGGAGTACGGTGAATTTTACTGATGAAAACATAGATAGAACAATAGATTCCATACATGTAACCTCAAACAATCATGTACAAATTTGTCTCATCAACACAAACACTGGAATTCCATTCATCTCTACATTGGAATTCAGACCTTTGCCAAATGAGACTTATGAGATGTTGACAAGATCGTTGTTACTTTACAACCGATTAGATATGGGTACAACGAATAATCAAACATACAGGTTTCCTAGTGATATATATGATCGATTTTGGCCGCCCTTCAATTGGCCTGAGTGGACAAGCATAAGTACCACACTTATGATAGATTCAACTTATGATAGTTATGAACCAGGGTCATCTGTCATGGGAACTGCAGCTGTGAGAATAGATACCAAAAAGCCTATGGATATTTGGTGGGAGCCTGAAGATGTAAACACCCAGTATTATGTATATATGCACTTTGCGGAAGTTGAAAATCTCCAAGCCAATCAAACCAGAGGATTCAATATCACTTATAGTGGGAGACTTTGGTATGGTCCTCTCATAACCAGCTACTTGTCAGCACAAACAGTTTATAGTACAAGGCCATTAACAACACCAAAAGATAAGCATCTATTTTCACTTATACCAATTGAAAATTCAACACACCCTCCAATCATAAATGCCATGGAAATTTATTCTGTAATAGATCTGTCAGAGCTAGCATCAGATCAAGGAGATGTGGATGCAATAACAAGCATCAAGTCAACATATGGAATAGTCAGAGATTGGGCTGGAGATCCATGCGTTCCAAGAGCATACCCTTGGGAGGGTATAGATTGTACCAAAACAAATGAAACTGCTCCTAGAATTGTGTCTTTGAATTTGTCATCAAGTGGATTGACAGGAGAGATTTCTCAAAGTATAAAGAATCTACAAATGCTAGAAATATTGGACTTGTCAAACAATGACTTGACGGGAAATATCCCAGATTTTCTCTCGAACTTATCAAACCTTAGAGTCTTAAAGTTAGATAACAACAAGCTCACAGGCTCTGTTCCATCTGAACTCCTAAAGAGAGTCGATGATGGTTCATTATCATTAAGTTTTCAAGGGAATCCAAATCTAGCTTGTACATCAGATTCGTGCAAGAGTAAGAAGAAGACGACTAGTATTGTTATTCCAATTGTAGCATCAGTTGGTGGATTCATAGGCATCGTGGTAGTTTCAATCATCGTTCTTTTAATTGTTAAATCAAGGAAGAAACGACAAAATAAAACCGTTCTTCCAAAAGTGGATCCCTCAGGACCCAACGACCAAATAAGTGATCAGTTCTTGGAGACAAGGAGGCGGCAGTTCACATATTCAGAAGTCTTGAGGATGACCAATAATTTCGAGAGAATTCTAGGAAAAGGAGGTTTTGGGATAGTTTACTATGGCACTATAGACAAAACTCAAGTGGCCGTGAAGATGCTTTCACAAGCTTCAGGTCATGGTTATCAGCAGTTTCAAGCAGAGGTTACACTTCTTTTGCGAGTTCACCATAAAAATTTGACAAGTCTTGTGGGATATTTGAATGAAGGAGACCGCCTTGGTCTCATTTATGAGTTCATGGCCAAAGGAAACTTAGCAGAGCATCTTTCTGAAACGAGTTCATATGTGCTAAGTTGGCAAGATAGGCTCCGGATAGCAATGGATGCAGCACAAGGATTGGAGTACCTACACGATGGTTGCAAGCCACCCATAATCCACAGAGATGTGAAAACAACAAACATCTTATTGACAGAGAATTTCCAAGCAAAACTTGCAGATTTTGGTTTATCCAAAAGCTTCCCAGTAGATGCCAACAAGACAAACAACTACATGTCCACCGTTGTTGCTGGCACCCCTGGTTACCTTGATCCAGACTACTACTTATCGAACAGGCTGACGGAGAAAAGCGACGTGTACAGCTTTGGAGTAGCTCTACTGGAGATAATCACCTGCAGACCTGTGATATCAAGAAGTGAAGAAAATGTTCATATTAGTAAATGGGTAAACTCGATGGCGGCTCAAGGGGACATAAATGGGATAGTGGATGAAAGATTGAGAGGAAAATATGATGCTAACTCAGTTTGGAAGGCAGTGGAGGTGGCGTTGAATTGTGTATCTGGGAGCTCTGCAAGAAGACCAACGATGAACCATGTGGTGGCGGAACTGAAGAGTTGTTTAGCCATAGAATTGGAACGAACGCCGGAGAGTGGAGGTTATAATTCGACGAATTCCGTCAATGTGATGTCCATTATAATGGATTACAGTGAAGCCACTCCAATGGCTAGATGA 2679 39.9 MDVSTYLLFAFLSSVALLYLVPAQGQSGFISLDCGLPPNTNYIEPTTTLQFTSDAAYISSGKSKSLSSTYNELLQRQYLHVRSFPQGRRNCYNISVKKNTKYLMRASFFYGNYDGLNQLPKFNLYFGDSLWSTVNFTDENIDRTIDSIHVTSNNHVQICLINTNTGIPFISTLEFRPLPNETYEMLTRSLLLYNRLDMGTTNNQTYRFPSDIYDRFWPPFNWPEWTSISTTLMIDSTYDSYEPGSSVMGTAAVRIDTKKPMDIWWEPEDVNTQYYVYMHFAEVENLQANQTRGFNITYSGRLWYGPLITSYLSAQTVYSTRPLTTPKDKHLFSLIPIENSTHPPIINAMEIYSVIDLSELASDQGDVDAITSIKSTYGIVRDWAGDPCVPRAYPWEGIDCTKTNETAPRIVSLNLSSSGLTGEISQSIKNLQMLEILDLSNNDLTGNIPDFLSNLSNLRVLKLDNNKLTGSVPSELLKRVDDGSLSLSFQGNPNLACTSDSCKSKKKTTSIVIPIVASVGGFIGIVVVSIIVLLIVKSRKKRQNKTVLPKVDPSGPNDQISDQFLETRRRQFTYSEVLRMTNNFERILGKGGFGIVYYGTIDKTQVAVKMLSQASGHGYQQFQAEVTLLLRVHHKNLTSLVGYLNEGDRLGLIYEFMAKGNLAEHLSETSSYVLSWQDRLRIAMDAAQGLEYLHDGCKPPIIHRDVKTTNILLTENFQAKLADFGLSKSFPVDANKTNNYMSTVVAGTPGYLDPDYYLSNRLTEKSDVYSFGVALLEIITCRPVISRSEENVHISKWVNSMAAQGDINGIVDERLRGKYDANSVWKAVEVALNCVSGSSARRPTMNHVVAELKSCLAIELERTPESGGYNSTNSVNVMSIIMDYSEATPMAR 892
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 35550173 35554002 - MELO3C024425.2.1 Cme01g02883 319859
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme01g02883 892 ProSiteProfiles Leucine-rich repeat profile. 433 456 IPR001611 GO:0005515
Cme01g02883 892 CDD STKc_IRAK 588 853 - -
Cme01g02883 892 Gene3D Ribonuclease Inhibitor 367 497 IPR032675 -
Cme01g02883 892 Gene3D Transferase(Phosphotransferase) domain 1 657 867 - -
Cme01g02883 892 Pfam Leucine rich repeat 409 468 IPR001611 GO:0005515
Cme01g02883 892 SUPERFAMILY L domain-like 393 477 - -
Cme01g02883 892 PANTHER OS07G0107800 PROTEIN-RELATED 15 892 - -
Cme01g02883 892 Pfam Malectin-like domain 32 354 IPR024788 -
Cme01g02883 892 Pfam Protein tyrosine and serine/threonine kinase 584 852 IPR001245 GO:0004672|GO:0006468
Cme01g02883 892 ProSitePatterns Protein kinases ATP-binding region signature. 588 609 IPR017441 GO:0005524
Cme01g02883 892 Gene3D Phosphorylase Kinase; domain 1 564 656 - -
Cme01g02883 892 ProSiteProfiles Protein kinase domain profile. 582 856 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme01g02883 892 SUPERFAMILY Protein kinase-like (PK-like) 558 852 IPR011009 -
Cme01g02883 892 PANTHER PUTATIVE-RELATED 15 892 - -
Cme01g02883 892 ProSitePatterns Serine/Threonine protein kinases active-site signature. 701 713 IPR008271 GO:0004672|GO:0006468
Cme01g02883 892 SMART serkin_6 582 826 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme01g02881 Cme-Chr1:35543006 Cme01g02883 Cme-Chr1:35550173 0 dispersed
Cme01g02883 Cme-Chr1:35550173 Cme04g01159 Cme-Chr4:15829451 0 dispersed
Cme01g02887 Cme-Chr1:35576682 Cme01g02883 Cme-Chr1:35550173 0 dispersed
Cme01g02888 Cme-Chr1:35582933 Cme01g02883 Cme-Chr1:35550173 0 dispersed
Cme01g02882 Cme-Chr1:35549066 Cme01g02883 Cme-Chr1:35550173 8.12E-73 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
64653 PF12819 Malectin_like 9.50E-109 CL0202 Cme PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme01g02883 - - csv:101205965 1571.99