Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme01g02905 ATGGCTATGTCCTGCAAGGATGGTAACAAACATGGTATCGACAACGGAAAATACGTTCGGTACACACCGGAGCAGGTTGAAGCCCTTGAGCGGCTTTATCACGAATGTCCAAAACCCAGTTCCATTCGTCGTCAGCAGCTTATCAGAGAGTGCCCCATTCTCTCTAATATCGAGCCTAAGCAAATCAAAGTCTGGTTTCAAAATAGAAGATGTCGTGAAAAACAGAGGAAAGAAGCGTCACGACTACAAGCTGTGAACAGGAAGCTTACGGCTATGAATAAGCTTTTAATGGAGGAGAATGATAGGCTGCAGAAGCAGGTTTCGCAGCTGGTGTATGAGAATGGCTATTTCCGCCAGCATACTCAGACTACAACGCTTGGAGCTAAAGATACAAGTTGTGAACCGGTGGTAACAAGCGGTCAACACAATTTGACATCTCAACATCCTCCAAGGGATGCTAGCCCTGCAGGACTTTTGTCTATTGCAGAAGAGACTTTAACAGAGTTTCTTTCAAAGGCCACTGGAACTGCCGTGGAGTGGGTCCAAATGCCTGGAATGAAGCCTGGTCCGGATTCCATTGGAATCGTTGCTATTTCTCATGGTTGCCCTGGTGTGGCTGCACGTGCCTGCGGCCTGGTGGGTCTAGAACCTACTAGAGTTGCCGAAATCCTCAAGGATCAGCCGTCGTGGTTTCGCGATTGCCGAGCTGTGGATGTTCTAAATGTGCTGCCAACAGCAAATGGTGGAACCATTGAGCTGCTTTATATGCAGCTCTATGCGCCTACAACATTGGCGCCTGCACGAGACTTCTGGTTGTTACGTTACACTTCTGTTTTGGAAGATGGTAGCCTTGTGATCTGTGAGAGATCACTTAAGAACACTCAGAATGGCCCAACCATGCCTCCAGTGCAGCATTTTGTTAGAGCAGAGATGTTGCCGAGTGGATATCTGATAAGACCATGTGAAGGAGGCGGTTCTATCATTCATATCGTTGATCATATGGATCTGGAGCCATGGAGTGTTCCAGAAGTCTTGCGCCCATTGTATGAATCATCCACTGTTCTTGCTCAAAAGATGACTATGGCGGCTCTTCGCCAGTTGAGGCAGATAGCTCATGAAGTTTCACAGTCAAATGTAACGGGCTGGGGTAGACGCCCTGCAGCTCTACGTTCGCTTGGTCAGAGGCTTACCCGGGGTTTTAATGAGGCACTTAATGGGTTTAATGACGAAGGGTGGTCTGTGATGGGAAATGATGGAATGGATGACGTAACTATTCTTGTGAATTCATCTCCTGACAAGCTAATGGGATTGAACATATCATTTGCAAATGGATTTTCTGCCATCAGTAATGCAGTTTTATGTGCTAGAGCATCGATGCTGTTGCAGAATGTGCCTCCTGCCATTCTACTGAGGTTTCTGCGGGAGCACAGGTCGGAGTGGGCAGACAACAATATTGATGCTTATTCAGCTGCTGCAGTCAAGGTTGGCCCATGGAGCTTACCAGGGTCTAGAGTTGGAAGTTTTGGGAATCAAGTAATACTTCCTCTGGCTCATACAATTGAGCACGAAGAGTTTCTAGAAGTGATTAAACTGGAAGGCATTGGCCATACTCCTGAGGATGCAATGATGCCTAGAGAAATGTTTCTACTGCAACTCTGCAGTGGAATGGATGAAAATGCTATTGGCACTTGTGCCGAACTAATATTTGCTCCAATTGATGCCTCTTTTGCTGATGACGCCCCTCTTTTGCCCTCGGGGTTTCGGATCATACCACTTGATTCTGGAAAGGAGGCATCCAGCCCAAATCGCACTCTCGACCTTGCTTCTGCTCTTGAAATTGGCCCTGCTGGAAACAGAACACCAAATGACTCTGTAAATTCTGGTTGTACAAGGTCTGTAATGACGATTGCATTTGAATTTGCATTTGAGAGCCACATGCAAGAGCATGTGGCATCGATGGCTCGACAATATGTACGTAGTATTATATCATCGGTTCAGAGGGTTGCATTAGCTCTCTCACCTTCTCATTTAAGTTCACATACTGGACTACGATCTCCACTTGGTACTCCTGAAGCACAGACACTTGCTCGATGGATTTGCAACAGTTATAGGTGCTACTTGGGGGTGGAGCTGTTAAAATCTGGAAATGAAGGAGGGGAGCTTGTCCTGAAAACATTGTGGCATCATTCGGATGCTATTATGTGCTGCTCTCTCAAGGCATTGCCAGTGTTCACCTTTGCAAATCAGGCAGGCCTTGACATGCTTGAGACAACCTTAGTTGCACTTCAAGACATAACTTTGGAAAAGATATTTGATGACCATGGAAAAAAGACACTCTGCTCAGAATTTCCTCAGATAATGCAACAGGGATTTGCTTGTCTTCAAGGAGGCATATGCCTTTCGAGCATGGGTCGTCCTGTCTCATACGAAAGAGCTGTGGCTTGGAAGGCGCTCATGTGCGCGTTCAACGCCTCCTCTTTGCTCCCTCCGTGCTTCTCCACTTCGCCTTCCACAGCCTCAGCGCAGAGCCCGCATATCCACTTCCCAAGGAACTTGTCTCGCATCCGATCGATGTACTCTTGTGTGTACTCCTCGCACATTCCACAACACTCGCATCGTGCATCCTCGATCTCAGATATCGGTGGAAGTGCCCCTTGCTTGGTATCGGATGCTGTCGCCAACTCCTTCCCCAATTCCATTGAAATGTCTGAGATTGTTCTTTGGAGGCCAGTGGATGAAAGCCTTGGTGGCTTGGAAAAATTGTTGCTCCTTGAAATAGCCTCGCCATGA 2790 47.24 MAMSCKDGNKHGIDNGKYVRYTPEQVEALERLYHECPKPSSIRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRKEASRLQAVNRKLTAMNKLLMEENDRLQKQVSQLVYENGYFRQHTQTTTLGAKDTSCEPVVTSGQHNLTSQHPPRDASPAGLLSIAEETLTEFLSKATGTAVEWVQMPGMKPGPDSIGIVAISHGCPGVAARACGLVGLEPTRVAEILKDQPSWFRDCRAVDVLNVLPTANGGTIELLYMQLYAPTTLAPARDFWLLRYTSVLEDGSLVICERSLKNTQNGPTMPPVQHFVRAEMLPSGYLIRPCEGGGSIIHIVDHMDLEPWSVPEVLRPLYESSTVLAQKMTMAALRQLRQIAHEVSQSNVTGWGRRPAALRSLGQRLTRGFNEALNGFNDEGWSVMGNDGMDDVTILVNSSPDKLMGLNISFANGFSAISNAVLCARASMLLQNVPPAILLRFLREHRSEWADNNIDAYSAAAVKVGPWSLPGSRVGSFGNQVILPLAHTIEHEEFLEVIKLEGIGHTPEDAMMPREMFLLQLCSGMDENAIGTCAELIFAPIDASFADDAPLLPSGFRIIPLDSGKEASSPNRTLDLASALEIGPAGNRTPNDSVNSGCTRSVMTIAFEFAFESHMQEHVASMARQYVRSIISSVQRVALALSPSHLSSHTGLRSPLGTPEAQTLARWICNSYRCYLGVELLKSGNEGGELVLKTLWHHSDAIMCCSLKALPVFTFANQAGLDMLETTLVALQDITLEKIFDDHGKKTLCSEFPQIMQQGFACLQGGICLSSMGRPVSYERAVAWKALMCAFNASSLLPPCFSTSPSTASAQSPHIHFPRNLSRIRSMYSCVYSSHIPQHSHRASSISDIGGSAPCLVSDAVANSFPNSIEMSEIVLWRPVDESLGGLEKLLLLEIASP 929
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 35727737 35735733 - MELO3C024446.2.1 Cme01g02905 319881
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme01g02905 929 Pfam START domain 161 369 IPR002913 GO:0008289
Cme01g02905 929 ProSiteProfiles 'Homeobox' domain profile. 12 76 IPR001356 GO:0003677
Cme01g02905 929 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-14 1 823 IPR044830 GO:0003700
Cme01g02905 929 Pfam MEKHLA domain 694 817 IPR013978 -
Cme01g02905 929 SUPERFAMILY Homeodomain-like 16 80 IPR009057 -
Cme01g02905 929 ProSiteProfiles START domain profile. 151 379 IPR002913 GO:0008289
Cme01g02905 929 SMART HOX_1 14 80 IPR001356 GO:0003677
Cme01g02905 929 CDD START_ArGLABRA2_like 155 371 - -
Cme01g02905 929 Pfam Homeodomain 17 75 IPR001356 GO:0003677
Cme01g02905 929 SUPERFAMILY Bet v1-like 160 371 - -
Cme01g02905 929 CDD bZIP 69 108 - -
Cme01g02905 929 Gene3D - 195 379 IPR023393 -
Cme01g02905 929 CDD homeodomain 17 77 IPR001356 GO:0003677
Cme01g02905 929 Gene3D - 10 83 - -
Cme01g02905 929 Coils Coil 72 113 - -
Cme01g02905 929 SMART START_1 160 370 IPR002913 GO:0008289
Cme01g02905 929 PANTHER CLASS III HD-ZIP PROTEIN CNA1 1 823 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme01g02905 Cme-Chr1:35727737 Cme04g00182 Cme-Chr4:1356820 0 dispersed
Cme01g02905 Cme-Chr1:35727737 Cme08g00387 Cme-Chr8:2409975 2.18E-25 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
40835 PF01852 START 3.40E-54 CL0209 Cme TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme01g02905 K09338 - csv:101213106 1640.94